Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10245 and ABZR87_RS10250 are separated by 67 nucleotides ABZR87_RS10250 and ABZR87_RS10255 are separated by 136 nucleotides ABZR87_RS10255 and ABZR87_RS10260 are separated by 53 nucleotides ABZR87_RS10260 and ABZR87_RS10265 are separated by 92 nucleotides ABZR87_RS10265 and ABZR87_RS10270 are separated by 169 nucleotides
ABZR87_RS10245: ABZR87_RS10245 - excinuclease ABC subunit UvrC, at 2,172,001 to 2,173,974
_RS10245
ABZR87_RS10250: ABZR87_RS10250 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,174,042 to 2,174,617
_RS10250
ABZR87_RS10255: ABZR87_RS10255 - tRNA-Gly, at 2,174,754 to 2,174,829
_RS10255
ABZR87_RS10260: ABZR87_RS10260 - tRNA-Gly, at 2,174,883 to 2,174,958
_RS10260
ABZR87_RS10265: ABZR87_RS10265 - tRNA-Cys, at 2,175,051 to 2,175,124
_RS10265
ABZR87_RS10270: ABZR87_RS10270 - hypothetical protein, at 2,175,294 to 2,176,976
_RS10270
Position (kb)
2174
2175 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2173.055 kb on - strand, within ABZR87_RS10245 at 2173.055 kb on - strand, within ABZR87_RS10245 at 2173.055 kb on - strand, within ABZR87_RS10245 at 2173.103 kb on + strand, within ABZR87_RS10245 at 2173.266 kb on + strand, within ABZR87_RS10245 at 2173.423 kb on + strand, within ABZR87_RS10245 at 2173.423 kb on + strand, within ABZR87_RS10245 at 2173.423 kb on + strand, within ABZR87_RS10245 at 2173.423 kb on + strand, within ABZR87_RS10245 at 2173.456 kb on + strand, within ABZR87_RS10245 at 2173.457 kb on - strand, within ABZR87_RS10245 at 2173.957 kb on + strand at 2173.957 kb on + strand at 2173.958 kb on - strand at 2174.002 kb on + strand at 2174.729 kb on + strand at 2174.761 kb on + strand at 2174.761 kb on + strand at 2174.761 kb on + strand at 2174.761 kb on + strand at 2174.761 kb on + strand at 2174.838 kb on + strand at 2174.838 kb on + strand at 2174.838 kb on + strand at 2175.029 kb on + strand at 2175.172 kb on + strand at 2175.172 kb on + strand at 2175.172 kb on + strand at 2175.172 kb on + strand at 2175.173 kb on - strand at 2175.173 kb on - strand at 2175.173 kb on - strand at 2175.173 kb on - strand at 2175.192 kb on - strand at 2175.192 kb on - strand at 2175.237 kb on + strand at 2175.237 kb on + strand at 2175.238 kb on - strand at 2175.296 kb on - strand at 2175.358 kb on + strand at 2175.358 kb on + strand at 2175.359 kb on - strand at 2175.359 kb on - strand at 2175.362 kb on + strand at 2175.362 kb on + strand at 2175.362 kb on + strand at 2175.414 kb on - strand at 2175.471 kb on + strand, within ABZR87_RS10270 at 2175.508 kb on + strand, within ABZR87_RS10270 at 2175.528 kb on - strand, within ABZR87_RS10270
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 2,173,055 - ABZR87_RS10245 0.53 -0.1 2,173,055 - ABZR87_RS10245 0.53 -2.0 2,173,055 - ABZR87_RS10245 0.53 -0.3 2,173,103 + ABZR87_RS10245 0.56 -0.1 2,173,266 + ABZR87_RS10245 0.64 -0.3 2,173,423 + ABZR87_RS10245 0.72 -0.6 2,173,423 + ABZR87_RS10245 0.72 +0.2 2,173,423 + ABZR87_RS10245 0.72 -0.2 2,173,423 + ABZR87_RS10245 0.72 +0.1 2,173,456 + ABZR87_RS10245 0.74 +0.5 2,173,457 - ABZR87_RS10245 0.74 -1.5 2,173,957 + -0.2 2,173,957 + +1.1 2,173,958 - -1.0 2,174,002 + -0.2 2,174,729 + -0.5 2,174,761 + -0.7 2,174,761 + +0.4 2,174,761 + -0.2 2,174,761 + -0.3 2,174,761 + -0.8 2,174,838 + +0.4 2,174,838 + -0.1 2,174,838 + -0.0 2,175,029 + +0.3 2,175,172 + +0.5 2,175,172 + +0.5 2,175,172 + -1.0 2,175,172 + +1.0 2,175,173 - -0.9 2,175,173 - -0.6 2,175,173 - +0.3 2,175,173 - +2.4 2,175,192 - -0.0 2,175,192 - -0.9 2,175,237 + -0.6 2,175,237 + +1.0 2,175,238 - +0.2 2,175,296 - +2.7 2,175,358 + +0.0 2,175,358 + -1.2 2,175,359 - -0.1 2,175,359 - -0.5 2,175,362 + +2.3 2,175,362 + +0.3 2,175,362 + -0.9 2,175,414 - +0.6 2,175,471 + ABZR87_RS10270 0.11 -0.5 2,175,508 + ABZR87_RS10270 0.13 +0.9 2,175,528 - ABZR87_RS10270 0.14 -0.3
Or see this region's nucleotide sequence