Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06060 and ABZR87_RS06065 are separated by 1 nucleotides ABZR87_RS06065 and ABZR87_RS06070 are separated by 2 nucleotides ABZR87_RS06070 and ABZR87_RS06075 are separated by 77 nucleotides
ABZR87_RS06060: ABZR87_RS06060 - ABC transporter permease, at 1,294,326 to 1,295,222
_RS06060
ABZR87_RS06065: ABZR87_RS06065 - ABC transporter permease, at 1,295,224 to 1,296,177
_RS06065
ABZR87_RS06070: ABZR87_RS06070 - extracellular solute-binding protein, at 1,296,180 to 1,297,445
_RS06070
ABZR87_RS06075: ABZR87_RS06075 - ABC transporter ATP-binding protein, at 1,297,523 to 1,298,581
_RS06075
Position (kb) 1296
1297
1298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1295.541 kb on + strand, within ABZR87_RS06065 at 1295.542 kb on - strand, within ABZR87_RS06065 at 1295.585 kb on + strand, within ABZR87_RS06065 at 1295.585 kb on + strand, within ABZR87_RS06065 at 1295.585 kb on + strand, within ABZR87_RS06065 at 1295.586 kb on - strand, within ABZR87_RS06065 at 1295.586 kb on - strand, within ABZR87_RS06065 at 1295.586 kb on - strand, within ABZR87_RS06065 at 1295.586 kb on - strand, within ABZR87_RS06065 at 1295.586 kb on - strand, within ABZR87_RS06065 at 1295.586 kb on - strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.597 kb on + strand, within ABZR87_RS06065 at 1295.598 kb on - strand, within ABZR87_RS06065 at 1295.598 kb on - strand, within ABZR87_RS06065 at 1295.598 kb on - strand, within ABZR87_RS06065 at 1295.598 kb on - strand, within ABZR87_RS06065 at 1295.624 kb on + strand, within ABZR87_RS06065 at 1295.624 kb on + strand, within ABZR87_RS06065 at 1295.624 kb on + strand, within ABZR87_RS06065 at 1295.882 kb on + strand, within ABZR87_RS06065 at 1295.882 kb on + strand, within ABZR87_RS06065 at 1295.883 kb on - strand, within ABZR87_RS06065 at 1295.883 kb on - strand, within ABZR87_RS06065 at 1295.883 kb on - strand, within ABZR87_RS06065 at 1295.883 kb on - strand, within ABZR87_RS06065 at 1295.883 kb on - strand, within ABZR87_RS06065 at 1295.913 kb on - strand, within ABZR87_RS06065 at 1295.951 kb on + strand, within ABZR87_RS06065 at 1295.951 kb on + strand, within ABZR87_RS06065 at 1295.951 kb on + strand, within ABZR87_RS06065 at 1296.217 kb on + strand at 1296.217 kb on + strand at 1296.217 kb on + strand at 1296.217 kb on + strand at 1296.217 kb on + strand at 1296.217 kb on + strand at 1296.218 kb on - strand at 1296.218 kb on - strand at 1296.274 kb on + strand at 1296.274 kb on + strand at 1296.274 kb on + strand at 1296.274 kb on + strand at 1296.275 kb on - strand at 1296.367 kb on + strand, within ABZR87_RS06070 at 1296.368 kb on - strand, within ABZR87_RS06070 at 1296.379 kb on + strand, within ABZR87_RS06070 at 1296.421 kb on + strand, within ABZR87_RS06070 at 1296.422 kb on - strand, within ABZR87_RS06070 at 1296.422 kb on - strand, within ABZR87_RS06070 at 1296.424 kb on + strand, within ABZR87_RS06070 at 1296.425 kb on - strand, within ABZR87_RS06070 at 1296.442 kb on + strand, within ABZR87_RS06070 at 1296.442 kb on + strand, within ABZR87_RS06070 at 1296.443 kb on - strand, within ABZR87_RS06070 at 1296.484 kb on + strand, within ABZR87_RS06070 at 1296.550 kb on + strand, within ABZR87_RS06070 at 1296.775 kb on + strand, within ABZR87_RS06070 at 1296.775 kb on + strand, within ABZR87_RS06070 at 1296.776 kb on - strand, within ABZR87_RS06070 at 1296.776 kb on - strand, within ABZR87_RS06070 at 1296.776 kb on - strand, within ABZR87_RS06070 at 1296.943 kb on + strand, within ABZR87_RS06070 at 1296.944 kb on - strand, within ABZR87_RS06070 at 1296.944 kb on - strand, within ABZR87_RS06070 at 1297.015 kb on + strand, within ABZR87_RS06070 at 1297.015 kb on + strand, within ABZR87_RS06070 at 1297.016 kb on - strand, within ABZR87_RS06070 at 1297.016 kb on - strand, within ABZR87_RS06070 at 1297.016 kb on - strand, within ABZR87_RS06070 at 1297.016 kb on - strand, within ABZR87_RS06070 at 1297.171 kb on + strand, within ABZR87_RS06070 at 1297.171 kb on + strand, within ABZR87_RS06070 at 1297.171 kb on + strand, within ABZR87_RS06070 at 1297.172 kb on - strand, within ABZR87_RS06070 at 1297.249 kb on + strand, within ABZR87_RS06070 at 1297.249 kb on + strand, within ABZR87_RS06070 at 1297.249 kb on + strand, within ABZR87_RS06070 at 1297.250 kb on - strand, within ABZR87_RS06070 at 1297.250 kb on - strand, within ABZR87_RS06070 at 1297.324 kb on + strand at 1297.325 kb on - strand at 1297.325 kb on - strand at 1297.362 kb on + strand at 1297.362 kb on + strand at 1297.363 kb on - strand at 1297.702 kb on - strand, within ABZR87_RS06075 at 1297.869 kb on + strand, within ABZR87_RS06075 at 1297.869 kb on + strand, within ABZR87_RS06075 at 1297.869 kb on + strand, within ABZR87_RS06075 at 1297.870 kb on - strand, within ABZR87_RS06075 at 1298.283 kb on + strand, within ABZR87_RS06075 at 1298.283 kb on + strand, within ABZR87_RS06075 at 1298.283 kb on + strand, within ABZR87_RS06075 at 1298.283 kb on + strand, within ABZR87_RS06075 at 1298.283 kb on + strand, within ABZR87_RS06075 at 1298.284 kb on - strand, within ABZR87_RS06075 at 1298.284 kb on - strand, within ABZR87_RS06075 at 1298.442 kb on + strand, within ABZR87_RS06075 at 1298.442 kb on + strand, within ABZR87_RS06075 at 1298.443 kb on - strand, within ABZR87_RS06075 at 1298.443 kb on - strand, within ABZR87_RS06075
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 1,295,541 + ABZR87_RS06065 0.33 +0.2 1,295,542 - ABZR87_RS06065 0.33 +1.8 1,295,585 + ABZR87_RS06065 0.38 -0.8 1,295,585 + ABZR87_RS06065 0.38 +0.6 1,295,585 + ABZR87_RS06065 0.38 -0.6 1,295,586 - ABZR87_RS06065 0.38 -0.2 1,295,586 - ABZR87_RS06065 0.38 +0.3 1,295,586 - ABZR87_RS06065 0.38 -0.8 1,295,586 - ABZR87_RS06065 0.38 -1.1 1,295,586 - ABZR87_RS06065 0.38 +0.2 1,295,586 - ABZR87_RS06065 0.38 +0.2 1,295,597 + ABZR87_RS06065 0.39 -0.1 1,295,597 + ABZR87_RS06065 0.39 +0.3 1,295,597 + ABZR87_RS06065 0.39 -0.4 1,295,597 + ABZR87_RS06065 0.39 +0.3 1,295,597 + ABZR87_RS06065 0.39 -0.5 1,295,597 + ABZR87_RS06065 0.39 -0.0 1,295,597 + ABZR87_RS06065 0.39 +1.1 1,295,597 + ABZR87_RS06065 0.39 -0.3 1,295,597 + ABZR87_RS06065 0.39 -2.3 1,295,598 - ABZR87_RS06065 0.39 +1.0 1,295,598 - ABZR87_RS06065 0.39 -1.0 1,295,598 - ABZR87_RS06065 0.39 -1.0 1,295,598 - ABZR87_RS06065 0.39 +0.2 1,295,624 + ABZR87_RS06065 0.42 +0.1 1,295,624 + ABZR87_RS06065 0.42 +2.3 1,295,624 + ABZR87_RS06065 0.42 +0.2 1,295,882 + ABZR87_RS06065 0.69 -0.0 1,295,882 + ABZR87_RS06065 0.69 +0.0 1,295,883 - ABZR87_RS06065 0.69 -0.0 1,295,883 - ABZR87_RS06065 0.69 +0.3 1,295,883 - ABZR87_RS06065 0.69 -0.0 1,295,883 - ABZR87_RS06065 0.69 -0.2 1,295,883 - ABZR87_RS06065 0.69 -0.1 1,295,913 - ABZR87_RS06065 0.72 +0.4 1,295,951 + ABZR87_RS06065 0.76 +1.1 1,295,951 + ABZR87_RS06065 0.76 -0.0 1,295,951 + ABZR87_RS06065 0.76 -0.0 1,296,217 + +0.4 1,296,217 + -1.4 1,296,217 + -0.3 1,296,217 + -0.2 1,296,217 + +0.9 1,296,217 + -0.1 1,296,218 - +0.3 1,296,218 - +1.2 1,296,274 + -0.2 1,296,274 + -0.1 1,296,274 + +0.7 1,296,274 + +2.6 1,296,275 - -1.5 1,296,367 + ABZR87_RS06070 0.15 -2.2 1,296,368 - ABZR87_RS06070 0.15 +0.3 1,296,379 + ABZR87_RS06070 0.16 -1.3 1,296,421 + ABZR87_RS06070 0.19 -0.4 1,296,422 - ABZR87_RS06070 0.19 +0.2 1,296,422 - ABZR87_RS06070 0.19 +2.0 1,296,424 + ABZR87_RS06070 0.19 -0.2 1,296,425 - ABZR87_RS06070 0.19 +0.4 1,296,442 + ABZR87_RS06070 0.21 +2.0 1,296,442 + ABZR87_RS06070 0.21 +1.3 1,296,443 - ABZR87_RS06070 0.21 +0.9 1,296,484 + ABZR87_RS06070 0.24 -0.3 1,296,550 + ABZR87_RS06070 0.29 +0.1 1,296,775 + ABZR87_RS06070 0.47 -0.3 1,296,775 + ABZR87_RS06070 0.47 -0.1 1,296,776 - ABZR87_RS06070 0.47 -3.0 1,296,776 - ABZR87_RS06070 0.47 +0.2 1,296,776 - ABZR87_RS06070 0.47 +0.3 1,296,943 + ABZR87_RS06070 0.60 +0.3 1,296,944 - ABZR87_RS06070 0.60 +1.7 1,296,944 - ABZR87_RS06070 0.60 +0.1 1,297,015 + ABZR87_RS06070 0.66 -0.2 1,297,015 + ABZR87_RS06070 0.66 -0.4 1,297,016 - ABZR87_RS06070 0.66 -2.8 1,297,016 - ABZR87_RS06070 0.66 +0.8 1,297,016 - ABZR87_RS06070 0.66 +0.6 1,297,016 - ABZR87_RS06070 0.66 +0.2 1,297,171 + ABZR87_RS06070 0.78 +0.2 1,297,171 + ABZR87_RS06070 0.78 -0.3 1,297,171 + ABZR87_RS06070 0.78 -0.8 1,297,172 - ABZR87_RS06070 0.78 -0.9 1,297,249 + ABZR87_RS06070 0.84 +0.3 1,297,249 + ABZR87_RS06070 0.84 -0.7 1,297,249 + ABZR87_RS06070 0.84 -0.3 1,297,250 - ABZR87_RS06070 0.85 -0.3 1,297,250 - ABZR87_RS06070 0.85 -0.7 1,297,324 + +0.1 1,297,325 - -0.5 1,297,325 - -0.3 1,297,362 + +1.3 1,297,362 + -0.9 1,297,363 - -0.7 1,297,702 - ABZR87_RS06075 0.17 +0.1 1,297,869 + ABZR87_RS06075 0.33 -0.1 1,297,869 + ABZR87_RS06075 0.33 +0.3 1,297,869 + ABZR87_RS06075 0.33 -0.2 1,297,870 - ABZR87_RS06075 0.33 +0.1 1,298,283 + ABZR87_RS06075 0.72 -0.3 1,298,283 + ABZR87_RS06075 0.72 -0.6 1,298,283 + ABZR87_RS06075 0.72 -1.0 1,298,283 + ABZR87_RS06075 0.72 -1.5 1,298,283 + ABZR87_RS06075 0.72 +1.1 1,298,284 - ABZR87_RS06075 0.72 -0.3 1,298,284 - ABZR87_RS06075 0.72 -0.1 1,298,442 + ABZR87_RS06075 0.87 -0.1 1,298,442 + ABZR87_RS06075 0.87 -0.0 1,298,443 - ABZR87_RS06075 0.87 -0.5 1,298,443 - ABZR87_RS06075 0.87 -1.0
Or see this region's nucleotide sequence