Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05665

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05660 and ABZR87_RS05665 are separated by 118 nucleotidesABZR87_RS05665 and ABZR87_RS05670 are separated by 86 nucleotidesABZR87_RS05670 and ABZR87_RS05675 are separated by 49 nucleotides ABZR87_RS05660: ABZR87_RS05660 - ornithine--oxo-acid transaminase, at 1,201,614 to 1,202,840 _RS05660 ABZR87_RS05665: ABZR87_RS05665 - LysR family transcriptional regulator, at 1,202,959 to 1,203,882 _RS05665 ABZR87_RS05670: ABZR87_RS05670 - TetR/AcrR family transcriptional regulator, at 1,203,969 to 1,204,733 _RS05670 ABZR87_RS05675: ABZR87_RS05675 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,204,783 to 1,205,757 _RS05675 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.085 kb on + strand, within ABZR87_RS05660at 1202.086 kb on - strand, within ABZR87_RS05660at 1202.086 kb on - strand, within ABZR87_RS05660at 1202.086 kb on - strand, within ABZR87_RS05660at 1202.212 kb on + strand, within ABZR87_RS05660at 1202.212 kb on + strand, within ABZR87_RS05660at 1202.212 kb on + strand, within ABZR87_RS05660at 1202.213 kb on - strand, within ABZR87_RS05660at 1202.359 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.365 kb on + strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.366 kb on - strand, within ABZR87_RS05660at 1202.532 kb on + strand, within ABZR87_RS05660at 1202.532 kb on + strand, within ABZR87_RS05660at 1202.637 kb on + strand, within ABZR87_RS05660at 1202.637 kb on + strand, within ABZR87_RS05660at 1202.638 kb on - strand, within ABZR87_RS05660at 1202.638 kb on - strand, within ABZR87_RS05660at 1202.638 kb on - strand, within ABZR87_RS05660at 1202.690 kb on - strand, within ABZR87_RS05660at 1202.710 kb on + strand, within ABZR87_RS05660at 1202.711 kb on - strand, within ABZR87_RS05660at 1202.711 kb on - strand, within ABZR87_RS05660at 1202.726 kb on + strandat 1202.779 kb on + strandat 1202.779 kb on + strandat 1202.779 kb on + strandat 1202.779 kb on + strandat 1202.779 kb on + strandat 1202.780 kb on - strandat 1202.780 kb on - strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.812 kb on + strandat 1202.813 kb on - strandat 1202.813 kb on - strandat 1202.813 kb on - strandat 1202.813 kb on - strandat 1202.813 kb on - strandat 1202.813 kb on - strandat 1202.813 kb on - strandat 1202.980 kb on + strandat 1202.980 kb on + strandat 1202.980 kb on + strandat 1202.980 kb on + strandat 1202.981 kb on - strandat 1202.988 kb on + strandat 1202.988 kb on + strandat 1202.988 kb on + strandat 1202.988 kb on + strandat 1202.989 kb on - strandat 1202.989 kb on - strandat 1202.989 kb on - strandat 1203.067 kb on + strand, within ABZR87_RS05665at 1203.068 kb on - strand, within ABZR87_RS05665at 1203.068 kb on - strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.274 kb on + strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.275 kb on - strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.338 kb on + strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.339 kb on - strand, within ABZR87_RS05665at 1203.419 kb on - strand, within ABZR87_RS05665at 1203.460 kb on + strand, within ABZR87_RS05665at 1203.460 kb on + strand, within ABZR87_RS05665at 1203.460 kb on + strand, within ABZR87_RS05665at 1203.461 kb on - strand, within ABZR87_RS05665at 1203.462 kb on + strand, within ABZR87_RS05665at 1203.463 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.560 kb on - strand, within ABZR87_RS05665at 1203.580 kb on + strand, within ABZR87_RS05665at 1203.581 kb on - strand, within ABZR87_RS05665at 1203.956 kb on + strandat 1203.957 kb on - strandat 1203.957 kb on - strandat 1203.957 kb on - strandat 1203.959 kb on + strandat 1203.960 kb on - strandat 1204.075 kb on + strand, within ABZR87_RS05670at 1204.075 kb on + strand, within ABZR87_RS05670at 1204.075 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.155 kb on + strand, within ABZR87_RS05670at 1204.156 kb on - strand, within ABZR87_RS05670at 1204.156 kb on - strand, within ABZR87_RS05670at 1204.156 kb on - strand, within ABZR87_RS05670at 1204.738 kb on + strandat 1204.738 kb on + strandat 1204.739 kb on - strandat 1204.739 kb on - strandat 1204.739 kb on - strandat 1204.739 kb on - strandat 1204.806 kb on + strandat 1204.882 kb on + strand, within ABZR87_RS05675at 1204.882 kb on + strand, within ABZR87_RS05675at 1204.882 kb on + strand, within ABZR87_RS05675at 1204.882 kb on + strand, within ABZR87_RS05675

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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1,202,085 + ABZR87_RS05660 0.38 -0.9
1,202,085 + ABZR87_RS05660 0.38 -0.5
1,202,085 + ABZR87_RS05660 0.38 +1.6
1,202,085 + ABZR87_RS05660 0.38 -2.3
1,202,085 + ABZR87_RS05660 0.38 -2.3
1,202,085 + ABZR87_RS05660 0.38 -0.7
1,202,085 + ABZR87_RS05660 0.38 +1.0
1,202,086 - ABZR87_RS05660 0.38 -0.4
1,202,086 - ABZR87_RS05660 0.38 -1.1
1,202,086 - ABZR87_RS05660 0.38 -0.9
1,202,212 + ABZR87_RS05660 0.49 -0.6
1,202,212 + ABZR87_RS05660 0.49 +0.0
1,202,212 + ABZR87_RS05660 0.49 -1.5
1,202,213 - ABZR87_RS05660 0.49 -0.7
1,202,359 + ABZR87_RS05660 0.61 -1.2
1,202,365 + ABZR87_RS05660 0.61 -0.4
1,202,365 + ABZR87_RS05660 0.61 -0.7
1,202,365 + ABZR87_RS05660 0.61 -1.2
1,202,365 + ABZR87_RS05660 0.61 -0.2
1,202,366 - ABZR87_RS05660 0.61 -0.3
1,202,366 - ABZR87_RS05660 0.61 +0.2
1,202,366 - ABZR87_RS05660 0.61 -0.4
1,202,366 - ABZR87_RS05660 0.61 +0.6
1,202,532 + ABZR87_RS05660 0.75 -1.5
1,202,532 + ABZR87_RS05660 0.75 -1.2
1,202,637 + ABZR87_RS05660 0.83 -1.5
1,202,637 + ABZR87_RS05660 0.83 -1.0
1,202,638 - ABZR87_RS05660 0.83 +0.4
1,202,638 - ABZR87_RS05660 0.83 -2.3
1,202,638 - ABZR87_RS05660 0.83 -0.5
1,202,690 - ABZR87_RS05660 0.88 -1.6
1,202,710 + ABZR87_RS05660 0.89 -0.9
1,202,711 - ABZR87_RS05660 0.89 -0.5
1,202,711 - ABZR87_RS05660 0.89 -1.6
1,202,726 + -0.4
1,202,779 + -0.5
1,202,779 + -1.2
1,202,779 + -0.7
1,202,779 + +0.6
1,202,779 + -2.6
1,202,780 - +0.6
1,202,780 - -0.2
1,202,812 + -1.4
1,202,812 + -1.4
1,202,812 + -2.0
1,202,812 + -1.9
1,202,812 + -1.5
1,202,812 + -0.9
1,202,812 + -2.7
1,202,812 + -1.3
1,202,812 + -1.2
1,202,813 - -0.9
1,202,813 - -0.1
1,202,813 - -1.2
1,202,813 - -0.8
1,202,813 - +1.7
1,202,813 - -1.4
1,202,813 - -0.6
1,202,980 + -0.1
1,202,980 + -2.2
1,202,980 + -1.0
1,202,980 + -1.2
1,202,981 - +0.5
1,202,988 + -0.7
1,202,988 + -0.6
1,202,988 + -1.0
1,202,988 + -1.2
1,202,989 - +0.6
1,202,989 - -0.9
1,202,989 - -0.7
1,203,067 + ABZR87_RS05665 0.12 -0.2
1,203,068 - ABZR87_RS05665 0.12 -2.0
1,203,068 - ABZR87_RS05665 0.12 -0.5
1,203,274 + ABZR87_RS05665 0.34 -0.4
1,203,274 + ABZR87_RS05665 0.34 -1.5
1,203,274 + ABZR87_RS05665 0.34 -0.1
1,203,274 + ABZR87_RS05665 0.34 -1.3
1,203,274 + ABZR87_RS05665 0.34 +0.7
1,203,274 + ABZR87_RS05665 0.34 -3.0
1,203,274 + ABZR87_RS05665 0.34 -0.8
1,203,274 + ABZR87_RS05665 0.34 -1.4
1,203,274 + ABZR87_RS05665 0.34 -0.7
1,203,274 + ABZR87_RS05665 0.34 -0.6
1,203,274 + ABZR87_RS05665 0.34 -1.1
1,203,274 + ABZR87_RS05665 0.34 -2.8
1,203,275 - ABZR87_RS05665 0.34 -0.6
1,203,275 - ABZR87_RS05665 0.34 -0.7
1,203,275 - ABZR87_RS05665 0.34 +0.1
1,203,275 - ABZR87_RS05665 0.34 -0.9
1,203,338 + ABZR87_RS05665 0.41 -0.2
1,203,338 + ABZR87_RS05665 0.41 +0.8
1,203,338 + ABZR87_RS05665 0.41 -1.3
1,203,338 + ABZR87_RS05665 0.41 -2.6
1,203,338 + ABZR87_RS05665 0.41 +0.0
1,203,338 + ABZR87_RS05665 0.41 +0.3
1,203,339 - ABZR87_RS05665 0.41 -0.1
1,203,339 - ABZR87_RS05665 0.41 -0.9
1,203,339 - ABZR87_RS05665 0.41 -0.7
1,203,339 - ABZR87_RS05665 0.41 -1.0
1,203,339 - ABZR87_RS05665 0.41 -1.6
1,203,419 - ABZR87_RS05665 0.50 +0.7
1,203,460 + ABZR87_RS05665 0.54 -1.0
1,203,460 + ABZR87_RS05665 0.54 -0.2
1,203,460 + ABZR87_RS05665 0.54 -1.0
1,203,461 - ABZR87_RS05665 0.54 -0.6
1,203,462 + ABZR87_RS05665 0.54 +0.1
1,203,463 - ABZR87_RS05665 0.55 +2.0
1,203,560 - ABZR87_RS05665 0.65 -0.9
1,203,560 - ABZR87_RS05665 0.65 -1.1
1,203,560 - ABZR87_RS05665 0.65 -1.7
1,203,560 - ABZR87_RS05665 0.65 -0.4
1,203,560 - ABZR87_RS05665 0.65 -0.5
1,203,560 - ABZR87_RS05665 0.65 -1.5
1,203,580 + ABZR87_RS05665 0.67 -0.2
1,203,581 - ABZR87_RS05665 0.67 +2.0
1,203,956 + -0.5
1,203,957 - -0.2
1,203,957 - +0.5
1,203,957 - -0.4
1,203,959 + -0.5
1,203,960 - +0.3
1,204,075 + ABZR87_RS05670 0.14 -0.8
1,204,075 + ABZR87_RS05670 0.14 -0.7
1,204,075 + ABZR87_RS05670 0.14 +0.2
1,204,155 + ABZR87_RS05670 0.24 +0.2
1,204,155 + ABZR87_RS05670 0.24 +0.4
1,204,155 + ABZR87_RS05670 0.24 -0.3
1,204,155 + ABZR87_RS05670 0.24 -0.9
1,204,155 + ABZR87_RS05670 0.24 -0.5
1,204,155 + ABZR87_RS05670 0.24 +0.3
1,204,155 + ABZR87_RS05670 0.24 -1.5
1,204,155 + ABZR87_RS05670 0.24 +0.1
1,204,156 - ABZR87_RS05670 0.24 -0.2
1,204,156 - ABZR87_RS05670 0.24 -2.0
1,204,156 - ABZR87_RS05670 0.24 -0.2
1,204,738 + +0.5
1,204,738 + +0.4
1,204,739 - -1.1
1,204,739 - -0.3
1,204,739 - +0.4
1,204,739 - -0.0
1,204,806 + +0.2
1,204,882 + ABZR87_RS05675 0.10 +0.1
1,204,882 + ABZR87_RS05675 0.10 +0.7
1,204,882 + ABZR87_RS05675 0.10 -1.8
1,204,882 + ABZR87_RS05675 0.10 -0.8

Or see this region's nucleotide sequence