Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04765

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04760 and ABZR87_RS04765 are separated by 291 nucleotidesABZR87_RS04765 and ABZR87_RS04770 are separated by 277 nucleotides ABZR87_RS04760: ABZR87_RS04760 - GMC family oxidoreductase N-terminal domain-containing protein, at 991,075 to 992,805 _RS04760 ABZR87_RS04765: ABZR87_RS04765 - amino acid ABC transporter substrate-binding protein, at 993,097 to 994,005 _RS04765 ABZR87_RS04770: ABZR87_RS04770 - acyl-CoA dehydrogenase family protein, at 994,283 to 995,944 _RS04770 Position (kb) 993 994 995Strain fitness (log2 ratio) -2 -1 0 1 2 3at 992.254 kb on + strand, within ABZR87_RS04760at 992.254 kb on + strand, within ABZR87_RS04760at 992.254 kb on + strand, within ABZR87_RS04760at 992.254 kb on + strand, within ABZR87_RS04760at 992.254 kb on + strand, within ABZR87_RS04760at 992.254 kb on + strand, within ABZR87_RS04760at 992.255 kb on - strand, within ABZR87_RS04760at 992.255 kb on - strand, within ABZR87_RS04760at 992.255 kb on - strand, within ABZR87_RS04760at 992.255 kb on - strand, within ABZR87_RS04760at 992.266 kb on + strand, within ABZR87_RS04760at 992.467 kb on + strand, within ABZR87_RS04760at 992.467 kb on + strand, within ABZR87_RS04760at 992.468 kb on - strand, within ABZR87_RS04760at 992.468 kb on - strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.545 kb on + strand, within ABZR87_RS04760at 992.546 kb on - strand, within ABZR87_RS04760at 992.546 kb on - strand, within ABZR87_RS04760at 992.546 kb on - strand, within ABZR87_RS04760at 992.546 kb on - strand, within ABZR87_RS04760at 992.546 kb on - strand, within ABZR87_RS04760at 992.726 kb on + strandat 992.726 kb on + strandat 992.726 kb on + strandat 992.726 kb on + strandat 992.726 kb on + strandat 992.726 kb on + strandat 992.727 kb on - strandat 992.803 kb on + strandat 992.871 kb on - strandat 992.871 kb on - strandat 992.871 kb on - strandat 993.111 kb on + strandat 993.111 kb on + strandat 993.111 kb on + strandat 993.123 kb on + strandat 993.123 kb on + strandat 993.123 kb on + strandat 993.123 kb on + strandat 993.123 kb on + strandat 993.124 kb on - strandat 993.124 kb on - strandat 993.126 kb on + strandat 993.127 kb on - strandat 993.147 kb on - strandat 993.209 kb on + strand, within ABZR87_RS04765at 993.210 kb on - strand, within ABZR87_RS04765at 993.341 kb on + strand, within ABZR87_RS04765at 993.341 kb on + strand, within ABZR87_RS04765at 993.342 kb on - strand, within ABZR87_RS04765at 993.342 kb on - strand, within ABZR87_RS04765at 993.611 kb on + strand, within ABZR87_RS04765at 993.611 kb on + strand, within ABZR87_RS04765at 993.611 kb on + strand, within ABZR87_RS04765at 993.611 kb on + strand, within ABZR87_RS04765at 993.611 kb on + strand, within ABZR87_RS04765at 993.612 kb on - strand, within ABZR87_RS04765at 993.612 kb on - strand, within ABZR87_RS04765at 993.612 kb on - strand, within ABZR87_RS04765at 993.734 kb on + strand, within ABZR87_RS04765at 993.734 kb on + strand, within ABZR87_RS04765at 993.734 kb on + strand, within ABZR87_RS04765at 993.734 kb on + strand, within ABZR87_RS04765at 993.734 kb on + strand, within ABZR87_RS04765at 993.734 kb on + strand, within ABZR87_RS04765at 993.734 kb on + strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.735 kb on - strand, within ABZR87_RS04765at 993.836 kb on + strand, within ABZR87_RS04765at 993.837 kb on - strand, within ABZR87_RS04765at 993.837 kb on - strand, within ABZR87_RS04765at 993.837 kb on - strand, within ABZR87_RS04765at 994.030 kb on - strandat 994.037 kb on + strandat 994.037 kb on + strandat 994.038 kb on - strandat 994.038 kb on - strandat 994.038 kb on - strandat 994.155 kb on - strandat 994.155 kb on - strandat 994.155 kb on - strandat 994.155 kb on - strandat 994.171 kb on + strandat 994.171 kb on + strandat 994.173 kb on + strandat 994.174 kb on - strandat 994.203 kb on - strandat 994.284 kb on + strandat 994.284 kb on + strandat 994.284 kb on + strandat 994.284 kb on + strandat 994.285 kb on - strandat 994.285 kb on - strandat 994.659 kb on + strand, within ABZR87_RS04770at 994.710 kb on + strand, within ABZR87_RS04770at 994.710 kb on + strand, within ABZR87_RS04770at 994.710 kb on + strand, within ABZR87_RS04770at 994.711 kb on - strand, within ABZR87_RS04770

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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992,254 + ABZR87_RS04760 0.68 -0.4
992,254 + ABZR87_RS04760 0.68 -0.4
992,254 + ABZR87_RS04760 0.68 -0.7
992,254 + ABZR87_RS04760 0.68 +0.2
992,254 + ABZR87_RS04760 0.68 -1.6
992,254 + ABZR87_RS04760 0.68 +0.1
992,255 - ABZR87_RS04760 0.68 -0.0
992,255 - ABZR87_RS04760 0.68 +0.3
992,255 - ABZR87_RS04760 0.68 -0.2
992,255 - ABZR87_RS04760 0.68 -0.3
992,266 + ABZR87_RS04760 0.69 +0.6
992,467 + ABZR87_RS04760 0.80 -0.1
992,467 + ABZR87_RS04760 0.80 +0.7
992,468 - ABZR87_RS04760 0.80 +0.5
992,468 - ABZR87_RS04760 0.80 -0.5
992,545 + ABZR87_RS04760 0.85 +0.7
992,545 + ABZR87_RS04760 0.85 +0.2
992,545 + ABZR87_RS04760 0.85 +0.6
992,545 + ABZR87_RS04760 0.85 -1.1
992,545 + ABZR87_RS04760 0.85 -2.3
992,545 + ABZR87_RS04760 0.85 -0.4
992,545 + ABZR87_RS04760 0.85 +0.7
992,545 + ABZR87_RS04760 0.85 +0.3
992,545 + ABZR87_RS04760 0.85 +0.2
992,545 + ABZR87_RS04760 0.85 -0.5
992,545 + ABZR87_RS04760 0.85 -0.7
992,545 + ABZR87_RS04760 0.85 +0.4
992,545 + ABZR87_RS04760 0.85 -0.0
992,546 - ABZR87_RS04760 0.85 -0.6
992,546 - ABZR87_RS04760 0.85 -0.3
992,546 - ABZR87_RS04760 0.85 -0.9
992,546 - ABZR87_RS04760 0.85 +1.6
992,546 - ABZR87_RS04760 0.85 -0.1
992,726 + -0.0
992,726 + +0.2
992,726 + +0.3
992,726 + -0.0
992,726 + -0.0
992,726 + +0.4
992,727 - -1.5
992,803 + -0.1
992,871 - -0.4
992,871 - -0.5
992,871 - +0.0
993,111 + -0.7
993,111 + +0.6
993,111 + -0.7
993,123 + +0.3
993,123 + +0.3
993,123 + -0.1
993,123 + +1.0
993,123 + +0.6
993,124 - -0.1
993,124 - -0.1
993,126 + -0.2
993,127 - -1.6
993,147 - -0.3
993,209 + ABZR87_RS04765 0.12 +2.1
993,210 - ABZR87_RS04765 0.12 +0.5
993,341 + ABZR87_RS04765 0.27 +1.7
993,341 + ABZR87_RS04765 0.27 -0.4
993,342 - ABZR87_RS04765 0.27 +0.8
993,342 - ABZR87_RS04765 0.27 -0.3
993,611 + ABZR87_RS04765 0.57 -0.4
993,611 + ABZR87_RS04765 0.57 -1.0
993,611 + ABZR87_RS04765 0.57 +2.8
993,611 + ABZR87_RS04765 0.57 -0.7
993,611 + ABZR87_RS04765 0.57 -0.2
993,612 - ABZR87_RS04765 0.57 -0.2
993,612 - ABZR87_RS04765 0.57 +0.4
993,612 - ABZR87_RS04765 0.57 +1.5
993,734 + ABZR87_RS04765 0.70 -0.7
993,734 + ABZR87_RS04765 0.70 -0.6
993,734 + ABZR87_RS04765 0.70 -0.6
993,734 + ABZR87_RS04765 0.70 -0.3
993,734 + ABZR87_RS04765 0.70 +0.2
993,734 + ABZR87_RS04765 0.70 +0.7
993,734 + ABZR87_RS04765 0.70 +0.6
993,735 - ABZR87_RS04765 0.70 +0.8
993,735 - ABZR87_RS04765 0.70 +0.6
993,735 - ABZR87_RS04765 0.70 -0.8
993,735 - ABZR87_RS04765 0.70 -0.6
993,735 - ABZR87_RS04765 0.70 +0.4
993,735 - ABZR87_RS04765 0.70 -0.0
993,735 - ABZR87_RS04765 0.70 +0.4
993,735 - ABZR87_RS04765 0.70 +0.1
993,735 - ABZR87_RS04765 0.70 +1.1
993,735 - ABZR87_RS04765 0.70 +0.3
993,735 - ABZR87_RS04765 0.70 -0.3
993,735 - ABZR87_RS04765 0.70 -1.0
993,735 - ABZR87_RS04765 0.70 -0.1
993,735 - ABZR87_RS04765 0.70 +0.1
993,735 - ABZR87_RS04765 0.70 -0.3
993,735 - ABZR87_RS04765 0.70 -0.1
993,836 + ABZR87_RS04765 0.81 +0.2
993,837 - ABZR87_RS04765 0.81 -0.3
993,837 - ABZR87_RS04765 0.81 -0.5
993,837 - ABZR87_RS04765 0.81 +0.2
994,030 - -0.0
994,037 + -0.1
994,037 + +0.0
994,038 - +0.7
994,038 - +0.4
994,038 - +0.5
994,155 - -0.6
994,155 - -0.3
994,155 - +0.6
994,155 - -0.4
994,171 + +1.7
994,171 + -1.6
994,173 + +0.3
994,174 - +0.5
994,203 - -0.5
994,284 + -0.1
994,284 + -0.8
994,284 + +0.3
994,284 + +0.3
994,285 - +0.5
994,285 - -0.0
994,659 + ABZR87_RS04770 0.23 +0.8
994,710 + ABZR87_RS04770 0.26 -0.5
994,710 + ABZR87_RS04770 0.26 -0.2
994,710 + ABZR87_RS04770 0.26 +0.3
994,711 - ABZR87_RS04770 0.26 -0.3

Or see this region's nucleotide sequence