Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03960

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03955 and ABZR87_RS03960 are separated by 9 nucleotidesABZR87_RS03960 and ABZR87_RS03965 are separated by 198 nucleotides ABZR87_RS03955: ABZR87_RS03955 - YbdK family carboxylate-amine ligase, at 824,150 to 825,283 _RS03955 ABZR87_RS03960: ABZR87_RS03960 - cation:proton antiporter, at 825,293 to 826,516 _RS03960 ABZR87_RS03965: ABZR87_RS03965 - branched-chain amino acid ABC transporter substrate-binding protein, at 826,715 to 827,860 _RS03965 Position (kb) 825 826 827Strain fitness (log2 ratio) -2 -1 0 1 2at 824.397 kb on + strand, within ABZR87_RS03955at 824.397 kb on + strand, within ABZR87_RS03955at 824.397 kb on + strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.445 kb on + strand, within ABZR87_RS03955at 824.446 kb on - strand, within ABZR87_RS03955at 824.454 kb on + strand, within ABZR87_RS03955at 824.454 kb on + strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.515 kb on + strand, within ABZR87_RS03955at 824.515 kb on + strand, within ABZR87_RS03955at 824.516 kb on - strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.614 kb on - strand, within ABZR87_RS03955at 824.614 kb on - strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.811 kb on - strand, within ABZR87_RS03955at 824.814 kb on + strand, within ABZR87_RS03955at 824.814 kb on + strand, within ABZR87_RS03955at 824.815 kb on - strand, within ABZR87_RS03955at 824.838 kb on + strand, within ABZR87_RS03955at 824.838 kb on + strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.910 kb on + strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.938 kb on - strand, within ABZR87_RS03955at 825.147 kb on + strand, within ABZR87_RS03955at 825.148 kb on - strand, within ABZR87_RS03955at 825.148 kb on - strand, within ABZR87_RS03955at 825.148 kb on - strand, within ABZR87_RS03955at 825.201 kb on + strandat 825.201 kb on + strandat 825.201 kb on + strandat 825.202 kb on - strandat 825.202 kb on - strandat 825.202 kb on - strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.295 kb on - strandat 825.295 kb on - strandat 825.426 kb on + strand, within ABZR87_RS03960at 825.426 kb on + strand, within ABZR87_RS03960at 825.439 kb on + strand, within ABZR87_RS03960at 825.825 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.912 kb on + strand, within ABZR87_RS03960at 825.913 kb on - strand, within ABZR87_RS03960at 825.949 kb on - strand, within ABZR87_RS03960at 825.955 kb on + strand, within ABZR87_RS03960at 825.955 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.997 kb on - strand, within ABZR87_RS03960at 825.997 kb on - strand, within ABZR87_RS03960at 825.997 kb on - strand, within ABZR87_RS03960at 826.369 kb on - strand, within ABZR87_RS03960at 826.519 kb on + strandat 826.585 kb on - strandat 826.591 kb on + strandat 826.688 kb on - strandat 826.716 kb on + strandat 826.717 kb on - strandat 826.717 kb on - strandat 826.717 kb on - strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.768 kb on - strandat 826.768 kb on - strandat 826.809 kb on + strandat 826.809 kb on + strandat 826.810 kb on - strandat 826.810 kb on - strandat 826.815 kb on + strandat 826.815 kb on + strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.866 kb on + strand, within ABZR87_RS03965at 826.866 kb on + strand, within ABZR87_RS03965at 826.866 kb on + strand, within ABZR87_RS03965at 826.867 kb on - strand, within ABZR87_RS03965at 826.867 kb on - strand, within ABZR87_RS03965at 826.867 kb on - strand, within ABZR87_RS03965at 826.929 kb on + strand, within ABZR87_RS03965at 826.929 kb on + strand, within ABZR87_RS03965at 826.930 kb on - strand, within ABZR87_RS03965at 826.930 kb on - strand, within ABZR87_RS03965at 826.930 kb on - strand, within ABZR87_RS03965at 826.936 kb on - strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.945 kb on - strand, within ABZR87_RS03965at 826.977 kb on + strand, within ABZR87_RS03965at 826.977 kb on + strand, within ABZR87_RS03965at 826.977 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.990 kb on - strand, within ABZR87_RS03965at 827.181 kb on + strand, within ABZR87_RS03965at 827.181 kb on + strand, within ABZR87_RS03965at 827.181 kb on + strand, within ABZR87_RS03965at 827.182 kb on - strand, within ABZR87_RS03965at 827.328 kb on + strand, within ABZR87_RS03965at 827.328 kb on + strand, within ABZR87_RS03965at 827.329 kb on - strand, within ABZR87_RS03965at 827.364 kb on + strand, within ABZR87_RS03965at 827.364 kb on + strand, within ABZR87_RS03965at 827.445 kb on + strand, within ABZR87_RS03965at 827.446 kb on - strand, within ABZR87_RS03965at 827.446 kb on - strand, within ABZR87_RS03965at 827.446 kb on - strand, within ABZR87_RS03965at 827.460 kb on + strand, within ABZR87_RS03965at 827.460 kb on + strand, within ABZR87_RS03965at 827.460 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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824,397 + ABZR87_RS03955 0.22 -0.3
824,397 + ABZR87_RS03955 0.22 +0.1
824,397 + ABZR87_RS03955 0.22 +0.5
824,398 - ABZR87_RS03955 0.22 +0.2
824,398 - ABZR87_RS03955 0.22 -0.3
824,398 - ABZR87_RS03955 0.22 +0.0
824,398 - ABZR87_RS03955 0.22 -0.3
824,445 + ABZR87_RS03955 0.26 -0.2
824,446 - ABZR87_RS03955 0.26 -0.6
824,454 + ABZR87_RS03955 0.27 -0.5
824,454 + ABZR87_RS03955 0.27 +0.0
824,455 - ABZR87_RS03955 0.27 -0.5
824,455 - ABZR87_RS03955 0.27 +0.5
824,455 - ABZR87_RS03955 0.27 +0.2
824,455 - ABZR87_RS03955 0.27 +1.0
824,515 + ABZR87_RS03955 0.32 -0.8
824,515 + ABZR87_RS03955 0.32 +0.3
824,516 - ABZR87_RS03955 0.32 -1.2
824,517 + ABZR87_RS03955 0.32 +0.2
824,517 + ABZR87_RS03955 0.32 +0.2
824,517 + ABZR87_RS03955 0.32 +0.2
824,517 + ABZR87_RS03955 0.32 +0.4
824,517 + ABZR87_RS03955 0.32 -0.8
824,517 + ABZR87_RS03955 0.32 -0.8
824,517 + ABZR87_RS03955 0.32 -0.3
824,518 - ABZR87_RS03955 0.32 +1.2
824,518 - ABZR87_RS03955 0.32 -0.2
824,518 - ABZR87_RS03955 0.32 +0.6
824,613 + ABZR87_RS03955 0.41 -0.5
824,613 + ABZR87_RS03955 0.41 -0.2
824,613 + ABZR87_RS03955 0.41 -0.2
824,613 + ABZR87_RS03955 0.41 +0.2
824,613 + ABZR87_RS03955 0.41 -0.1
824,614 - ABZR87_RS03955 0.41 -0.1
824,614 - ABZR87_RS03955 0.41 -2.3
824,664 + ABZR87_RS03955 0.45 +0.2
824,664 + ABZR87_RS03955 0.45 +0.6
824,664 + ABZR87_RS03955 0.45 +0.6
824,811 - ABZR87_RS03955 0.58 -2.6
824,814 + ABZR87_RS03955 0.59 -1.4
824,814 + ABZR87_RS03955 0.59 +0.8
824,815 - ABZR87_RS03955 0.59 -1.6
824,838 + ABZR87_RS03955 0.61 -0.3
824,838 + ABZR87_RS03955 0.61 -0.1
824,839 - ABZR87_RS03955 0.61 -0.6
824,839 - ABZR87_RS03955 0.61 -0.4
824,839 - ABZR87_RS03955 0.61 -0.6
824,910 + ABZR87_RS03955 0.67 -1.0
824,917 - ABZR87_RS03955 0.68 +0.4
824,917 - ABZR87_RS03955 0.68 -1.2
824,917 - ABZR87_RS03955 0.68 +1.2
824,917 - ABZR87_RS03955 0.68 +1.0
824,931 + ABZR87_RS03955 0.69 -0.1
824,931 + ABZR87_RS03955 0.69 -0.9
824,931 + ABZR87_RS03955 0.69 -0.5
824,931 + ABZR87_RS03955 0.69 -0.2
824,931 + ABZR87_RS03955 0.69 -0.8
824,932 - ABZR87_RS03955 0.69 -1.1
824,932 - ABZR87_RS03955 0.69 -0.9
824,932 - ABZR87_RS03955 0.69 -0.8
824,932 - ABZR87_RS03955 0.69 +0.8
824,932 - ABZR87_RS03955 0.69 +0.7
824,932 - ABZR87_RS03955 0.69 -0.3
824,932 - ABZR87_RS03955 0.69 -1.3
824,938 - ABZR87_RS03955 0.69 +0.8
825,147 + ABZR87_RS03955 0.88 -0.2
825,148 - ABZR87_RS03955 0.88 -1.6
825,148 - ABZR87_RS03955 0.88 -0.5
825,148 - ABZR87_RS03955 0.88 -0.5
825,201 + -0.3
825,201 + -0.8
825,201 + +1.1
825,202 - +0.8
825,202 - -0.2
825,202 - -0.5
825,294 + +0.6
825,294 + +0.6
825,294 + +0.2
825,294 + +1.5
825,294 + -0.3
825,295 - -0.6
825,295 - -0.3
825,426 + ABZR87_RS03960 0.11 -1.8
825,426 + ABZR87_RS03960 0.11 +0.4
825,439 + ABZR87_RS03960 0.12 -0.2
825,825 + ABZR87_RS03960 0.43 -1.6
825,852 + ABZR87_RS03960 0.46 -0.2
825,852 + ABZR87_RS03960 0.46 +1.8
825,852 + ABZR87_RS03960 0.46 -0.2
825,852 + ABZR87_RS03960 0.46 -0.4
825,853 - ABZR87_RS03960 0.46 -0.6
825,853 - ABZR87_RS03960 0.46 -0.5
825,853 - ABZR87_RS03960 0.46 -0.7
825,853 - ABZR87_RS03960 0.46 -1.0
825,853 - ABZR87_RS03960 0.46 -1.2
825,912 + ABZR87_RS03960 0.51 -0.5
825,913 - ABZR87_RS03960 0.51 -1.9
825,949 - ABZR87_RS03960 0.54 -0.4
825,955 + ABZR87_RS03960 0.54 -1.8
825,955 + ABZR87_RS03960 0.54 -1.0
825,996 + ABZR87_RS03960 0.57 -0.4
825,996 + ABZR87_RS03960 0.57 +0.0
825,996 + ABZR87_RS03960 0.57 -0.2
825,996 + ABZR87_RS03960 0.57 +0.1
825,996 + ABZR87_RS03960 0.57 -0.4
825,996 + ABZR87_RS03960 0.57 -2.2
825,996 + ABZR87_RS03960 0.57 -0.1
825,997 - ABZR87_RS03960 0.58 -0.3
825,997 - ABZR87_RS03960 0.58 -0.2
825,997 - ABZR87_RS03960 0.58 +0.4
826,369 - ABZR87_RS03960 0.88 -0.9
826,519 + -0.0
826,585 - -0.7
826,591 + -0.3
826,688 - +0.6
826,716 + -1.0
826,717 - -0.7
826,717 - +2.2
826,717 - +0.3
826,767 + +0.2
826,767 + -0.4
826,767 + +1.5
826,767 + +1.1
826,767 + +0.2
826,768 - +1.1
826,768 - +0.4
826,809 + +0.7
826,809 + +0.5
826,810 - +1.1
826,810 - +0.2
826,815 + +0.9
826,815 + -0.3
826,816 - +0.3
826,816 - +0.4
826,816 - +1.8
826,816 - -0.0
826,816 - -0.0
826,866 + ABZR87_RS03965 0.13 +1.1
826,866 + ABZR87_RS03965 0.13 -0.1
826,866 + ABZR87_RS03965 0.13 +0.7
826,867 - ABZR87_RS03965 0.13 +0.9
826,867 - ABZR87_RS03965 0.13 -1.2
826,867 - ABZR87_RS03965 0.13 +0.4
826,929 + ABZR87_RS03965 0.19 +0.1
826,929 + ABZR87_RS03965 0.19 -1.3
826,930 - ABZR87_RS03965 0.19 +0.4
826,930 - ABZR87_RS03965 0.19 -0.3
826,930 - ABZR87_RS03965 0.19 +0.9
826,936 - ABZR87_RS03965 0.19 +0.1
826,944 + ABZR87_RS03965 0.20 +2.1
826,944 + ABZR87_RS03965 0.20 +0.2
826,944 + ABZR87_RS03965 0.20 +1.2
826,944 + ABZR87_RS03965 0.20 +0.9
826,945 - ABZR87_RS03965 0.20 +0.2
826,977 + ABZR87_RS03965 0.23 +0.3
826,977 + ABZR87_RS03965 0.23 +0.7
826,977 + ABZR87_RS03965 0.23 +0.7
826,989 + ABZR87_RS03965 0.24 +0.0
826,989 + ABZR87_RS03965 0.24 +0.3
826,989 + ABZR87_RS03965 0.24 -1.8
826,989 + ABZR87_RS03965 0.24 +0.8
826,989 + ABZR87_RS03965 0.24 +0.0
826,989 + ABZR87_RS03965 0.24 +0.2
826,989 + ABZR87_RS03965 0.24 +1.4
826,989 + ABZR87_RS03965 0.24 -0.4
826,989 + ABZR87_RS03965 0.24 +1.1
826,990 - ABZR87_RS03965 0.24 +0.4
827,181 + ABZR87_RS03965 0.41 +2.4
827,181 + ABZR87_RS03965 0.41 +0.8
827,181 + ABZR87_RS03965 0.41 -0.5
827,182 - ABZR87_RS03965 0.41 -0.9
827,328 + ABZR87_RS03965 0.53 +1.1
827,328 + ABZR87_RS03965 0.53 +0.7
827,329 - ABZR87_RS03965 0.54 -0.1
827,364 + ABZR87_RS03965 0.57 +1.9
827,364 + ABZR87_RS03965 0.57 -1.6
827,445 + ABZR87_RS03965 0.64 +0.5
827,446 - ABZR87_RS03965 0.64 +0.3
827,446 - ABZR87_RS03965 0.64 -0.9
827,446 - ABZR87_RS03965 0.64 +0.6
827,460 + ABZR87_RS03965 0.65 +0.1
827,460 + ABZR87_RS03965 0.65 +0.4
827,460 + ABZR87_RS03965 0.65 +1.1
827,508 + ABZR87_RS03965 0.69 +1.4
827,508 + ABZR87_RS03965 0.69 +0.3
827,508 + ABZR87_RS03965 0.69 -0.2
827,508 + ABZR87_RS03965 0.69 -0.5
827,508 + ABZR87_RS03965 0.69 +0.1
827,509 - ABZR87_RS03965 0.69 +0.2
827,509 - ABZR87_RS03965 0.69 +0.5
827,509 - ABZR87_RS03965 0.69 -0.6
827,509 - ABZR87_RS03965 0.69 +0.7
827,509 - ABZR87_RS03965 0.69 +0.1
827,509 - ABZR87_RS03965 0.69 +0.3

Or see this region's nucleotide sequence