Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02655 and ABZR87_RS02660 are separated by 8 nucleotides ABZR87_RS02660 and ABZR87_RS02665 are separated by 25 nucleotides ABZR87_RS02665 and ABZR87_RS02670 are separated by 108 nucleotides
ABZR87_RS02655: ABZR87_RS02655 - anti-sigma factor, at 564,484 to 565,344
_RS02655
ABZR87_RS02660: ABZR87_RS02660 - RNA polymerase sigma factor, at 565,353 to 565,934
_RS02660
ABZR87_RS02665: ABZR87_RS02665 - ATP-binding protein, at 565,960 to 566,388
_RS02665
ABZR87_RS02670: ABZR87_RS02670 - c-type cytochrome biogenesis protein CcsB, at 566,497 to 567,684
_RS02670
Position (kb) 565
566
567 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.256 kb on + strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.257 kb on - strand, within ABZR87_RS02655 at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.304 kb on + strand at 565.305 kb on - strand at 565.323 kb on + strand at 565.323 kb on + strand at 565.324 kb on - strand at 565.324 kb on - strand at 565.520 kb on - strand, within ABZR87_RS02660 at 565.520 kb on - strand, within ABZR87_RS02660 at 565.551 kb on + strand, within ABZR87_RS02660 at 565.551 kb on + strand, within ABZR87_RS02660 at 565.552 kb on - strand, within ABZR87_RS02660 at 565.552 kb on - strand, within ABZR87_RS02660 at 565.934 kb on + strand at 565.934 kb on + strand at 565.934 kb on + strand at 565.934 kb on + strand at 565.935 kb on - strand at 565.935 kb on - strand at 565.935 kb on - strand at 565.935 kb on - strand at 565.961 kb on + strand at 565.961 kb on + strand at 566.039 kb on + strand, within ABZR87_RS02665 at 566.039 kb on + strand, within ABZR87_RS02665 at 566.040 kb on - strand, within ABZR87_RS02665 at 566.040 kb on - strand, within ABZR87_RS02665 at 566.099 kb on + strand, within ABZR87_RS02665 at 566.100 kb on - strand, within ABZR87_RS02665 at 566.100 kb on - strand, within ABZR87_RS02665 at 566.207 kb on + strand, within ABZR87_RS02665 at 566.207 kb on + strand, within ABZR87_RS02665 at 566.207 kb on + strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.208 kb on - strand, within ABZR87_RS02665 at 566.439 kb on + strand at 566.439 kb on + strand at 566.460 kb on + strand at 566.460 kb on + strand at 566.461 kb on - strand at 566.498 kb on + strand at 566.498 kb on + strand at 566.498 kb on + strand at 566.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 565,256 + ABZR87_RS02655 0.90 -2.4 565,256 + ABZR87_RS02655 0.90 -0.2 565,256 + ABZR87_RS02655 0.90 -2.8 565,256 + ABZR87_RS02655 0.90 -1.4 565,256 + ABZR87_RS02655 0.90 -4.9 565,256 + ABZR87_RS02655 0.90 -4.0 565,256 + ABZR87_RS02655 0.90 -3.3 565,256 + ABZR87_RS02655 0.90 -2.0 565,256 + ABZR87_RS02655 0.90 -2.2 565,256 + ABZR87_RS02655 0.90 -2.6 565,257 - ABZR87_RS02655 0.90 -2.1 565,257 - ABZR87_RS02655 0.90 -0.1 565,257 - ABZR87_RS02655 0.90 -1.1 565,257 - ABZR87_RS02655 0.90 +0.9 565,304 + -2.1 565,304 + -1.7 565,304 + -3.4 565,304 + -2.3 565,304 + -2.3 565,304 + -2.9 565,305 - +0.3 565,323 + -1.8 565,323 + +1.6 565,324 - -2.1 565,324 - -3.0 565,520 - ABZR87_RS02660 0.29 +0.2 565,520 - ABZR87_RS02660 0.29 -0.7 565,551 + ABZR87_RS02660 0.34 +0.8 565,551 + ABZR87_RS02660 0.34 +0.8 565,552 - ABZR87_RS02660 0.34 -0.2 565,552 - ABZR87_RS02660 0.34 +0.9 565,934 + -0.2 565,934 + +1.0 565,934 + -0.7 565,934 + +0.5 565,935 - -0.3 565,935 - -0.7 565,935 - +0.1 565,935 - +0.8 565,961 + -0.0 565,961 + -0.6 566,039 + ABZR87_RS02665 0.18 -0.2 566,039 + ABZR87_RS02665 0.18 +0.7 566,040 - ABZR87_RS02665 0.19 -0.0 566,040 - ABZR87_RS02665 0.19 +0.7 566,099 + ABZR87_RS02665 0.32 -0.3 566,100 - ABZR87_RS02665 0.33 -2.2 566,100 - ABZR87_RS02665 0.33 -0.4 566,207 + ABZR87_RS02665 0.58 +0.3 566,207 + ABZR87_RS02665 0.58 -0.6 566,207 + ABZR87_RS02665 0.58 +0.1 566,208 - ABZR87_RS02665 0.58 +0.2 566,208 - ABZR87_RS02665 0.58 -0.5 566,208 - ABZR87_RS02665 0.58 +0.4 566,208 - ABZR87_RS02665 0.58 -0.2 566,208 - ABZR87_RS02665 0.58 +0.6 566,208 - ABZR87_RS02665 0.58 +1.1 566,439 + -0.1 566,439 + +0.8 566,460 + -1.0 566,460 + -1.1 566,461 - -0.0 566,498 + -0.4 566,498 + +0.4 566,498 + +0.5 566,499 - +0.3
Or see this region's nucleotide sequence