Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02655

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02650 and ABZR87_RS02655 are separated by 95 nucleotidesABZR87_RS02655 and ABZR87_RS02660 are separated by 8 nucleotidesABZR87_RS02660 and ABZR87_RS02665 are separated by 25 nucleotides ABZR87_RS02650: ABZR87_RS02650 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 563,393 to 564,388 _RS02650 ABZR87_RS02655: ABZR87_RS02655 - anti-sigma factor, at 564,484 to 565,344 _RS02655 ABZR87_RS02660: ABZR87_RS02660 - RNA polymerase sigma factor, at 565,353 to 565,934 _RS02660 ABZR87_RS02665: ABZR87_RS02665 - ATP-binding protein, at 565,960 to 566,388 _RS02665 Position (kb) 564 565 566Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.574 kb on + strand, within ABZR87_RS02650at 563.575 kb on - strand, within ABZR87_RS02650at 563.583 kb on + strand, within ABZR87_RS02650at 563.584 kb on - strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.673 kb on + strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.674 kb on - strand, within ABZR87_RS02650at 563.733 kb on + strand, within ABZR87_RS02650at 563.796 kb on + strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.797 kb on - strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.868 kb on + strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.869 kb on - strand, within ABZR87_RS02650at 563.971 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.019 kb on - strand, within ABZR87_RS02650at 564.124 kb on - strand, within ABZR87_RS02650at 564.124 kb on - strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.135 kb on + strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.136 kb on - strand, within ABZR87_RS02650at 564.154 kb on - strand, within ABZR87_RS02650at 564.154 kb on - strand, within ABZR87_RS02650at 564.180 kb on + strand, within ABZR87_RS02650at 564.181 kb on - strand, within ABZR87_RS02650at 564.480 kb on - strandat 564.480 kb on - strandat 564.480 kb on - strandat 564.486 kb on - strandat 564.521 kb on + strandat 564.522 kb on - strandat 564.611 kb on + strand, within ABZR87_RS02655at 564.611 kb on + strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.612 kb on - strand, within ABZR87_RS02655at 564.764 kb on + strand, within ABZR87_RS02655at 564.764 kb on + strand, within ABZR87_RS02655at 564.765 kb on - strand, within ABZR87_RS02655at 564.765 kb on - strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.256 kb on + strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.257 kb on - strand, within ABZR87_RS02655at 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.304 kb on + strandat 565.305 kb on - strandat 565.323 kb on + strandat 565.323 kb on + strandat 565.324 kb on - strandat 565.324 kb on - strandat 565.520 kb on - strand, within ABZR87_RS02660at 565.520 kb on - strand, within ABZR87_RS02660at 565.551 kb on + strand, within ABZR87_RS02660at 565.551 kb on + strand, within ABZR87_RS02660at 565.552 kb on - strand, within ABZR87_RS02660at 565.552 kb on - strand, within ABZR87_RS02660at 565.934 kb on + strandat 565.934 kb on + strandat 565.934 kb on + strandat 565.934 kb on + strandat 565.935 kb on - strandat 565.935 kb on - strandat 565.935 kb on - strandat 565.935 kb on - strandat 565.961 kb on + strandat 565.961 kb on + strandat 566.039 kb on + strand, within ABZR87_RS02665at 566.039 kb on + strand, within ABZR87_RS02665at 566.040 kb on - strand, within ABZR87_RS02665at 566.040 kb on - strand, within ABZR87_RS02665at 566.099 kb on + strand, within ABZR87_RS02665at 566.100 kb on - strand, within ABZR87_RS02665at 566.100 kb on - strand, within ABZR87_RS02665at 566.207 kb on + strand, within ABZR87_RS02665at 566.207 kb on + strand, within ABZR87_RS02665at 566.207 kb on + strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665at 566.208 kb on - strand, within ABZR87_RS02665

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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563,574 + ABZR87_RS02650 0.18 +0.2
563,574 + ABZR87_RS02650 0.18 +1.3
563,574 + ABZR87_RS02650 0.18 +1.4
563,574 + ABZR87_RS02650 0.18 +0.4
563,574 + ABZR87_RS02650 0.18 +1.2
563,575 - ABZR87_RS02650 0.18 +0.3
563,583 + ABZR87_RS02650 0.19 -0.2
563,584 - ABZR87_RS02650 0.19 -0.6
563,673 + ABZR87_RS02650 0.28 -1.4
563,673 + ABZR87_RS02650 0.28 +0.2
563,673 + ABZR87_RS02650 0.28 -0.4
563,673 + ABZR87_RS02650 0.28 -0.5
563,673 + ABZR87_RS02650 0.28 +1.4
563,673 + ABZR87_RS02650 0.28 -0.5
563,674 - ABZR87_RS02650 0.28 -1.1
563,674 - ABZR87_RS02650 0.28 -0.3
563,674 - ABZR87_RS02650 0.28 +0.9
563,674 - ABZR87_RS02650 0.28 -0.0
563,674 - ABZR87_RS02650 0.28 +0.7
563,674 - ABZR87_RS02650 0.28 +0.3
563,674 - ABZR87_RS02650 0.28 +0.3
563,733 + ABZR87_RS02650 0.34 -0.1
563,796 + ABZR87_RS02650 0.40 -0.7
563,797 - ABZR87_RS02650 0.41 -0.3
563,797 - ABZR87_RS02650 0.41 +0.6
563,797 - ABZR87_RS02650 0.41 +0.4
563,868 + ABZR87_RS02650 0.48 -0.1
563,868 + ABZR87_RS02650 0.48 -0.4
563,868 + ABZR87_RS02650 0.48 +0.4
563,868 + ABZR87_RS02650 0.48 +1.2
563,869 - ABZR87_RS02650 0.48 -0.4
563,869 - ABZR87_RS02650 0.48 -0.1
563,869 - ABZR87_RS02650 0.48 +1.6
563,869 - ABZR87_RS02650 0.48 +0.4
563,869 - ABZR87_RS02650 0.48 -0.6
563,869 - ABZR87_RS02650 0.48 -1.3
563,869 - ABZR87_RS02650 0.48 -0.6
563,971 - ABZR87_RS02650 0.58 +0.7
564,019 - ABZR87_RS02650 0.63 +1.0
564,019 - ABZR87_RS02650 0.63 +0.2
564,019 - ABZR87_RS02650 0.63 -0.5
564,019 - ABZR87_RS02650 0.63 +0.7
564,019 - ABZR87_RS02650 0.63 -0.6
564,124 - ABZR87_RS02650 0.73 -0.3
564,124 - ABZR87_RS02650 0.73 +0.3
564,135 + ABZR87_RS02650 0.74 +0.3
564,135 + ABZR87_RS02650 0.74 +0.3
564,135 + ABZR87_RS02650 0.74 +0.5
564,136 - ABZR87_RS02650 0.75 +1.1
564,136 - ABZR87_RS02650 0.75 -0.0
564,136 - ABZR87_RS02650 0.75 +0.7
564,136 - ABZR87_RS02650 0.75 -1.1
564,136 - ABZR87_RS02650 0.75 +0.8
564,136 - ABZR87_RS02650 0.75 -0.0
564,136 - ABZR87_RS02650 0.75 +0.3
564,154 - ABZR87_RS02650 0.76 +0.2
564,154 - ABZR87_RS02650 0.76 -0.2
564,180 + ABZR87_RS02650 0.79 -0.2
564,181 - ABZR87_RS02650 0.79 -1.4
564,480 - +0.6
564,480 - -1.6
564,480 - +0.9
564,486 - +0.4
564,521 + +0.3
564,522 - -0.5
564,611 + ABZR87_RS02655 0.15 -1.0
564,611 + ABZR87_RS02655 0.15 -2.8
564,612 - ABZR87_RS02655 0.15 -1.5
564,612 - ABZR87_RS02655 0.15 -2.5
564,612 - ABZR87_RS02655 0.15 -2.3
564,612 - ABZR87_RS02655 0.15 -2.0
564,764 + ABZR87_RS02655 0.33 -2.6
564,764 + ABZR87_RS02655 0.33 -4.2
564,765 - ABZR87_RS02655 0.33 -1.7
564,765 - ABZR87_RS02655 0.33 -2.9
565,256 + ABZR87_RS02655 0.90 -2.4
565,256 + ABZR87_RS02655 0.90 -0.2
565,256 + ABZR87_RS02655 0.90 -2.8
565,256 + ABZR87_RS02655 0.90 -1.4
565,256 + ABZR87_RS02655 0.90 -4.9
565,256 + ABZR87_RS02655 0.90 -4.0
565,256 + ABZR87_RS02655 0.90 -3.3
565,256 + ABZR87_RS02655 0.90 -2.0
565,256 + ABZR87_RS02655 0.90 -2.2
565,256 + ABZR87_RS02655 0.90 -2.6
565,257 - ABZR87_RS02655 0.90 -2.1
565,257 - ABZR87_RS02655 0.90 -0.1
565,257 - ABZR87_RS02655 0.90 -1.1
565,257 - ABZR87_RS02655 0.90 +0.9
565,304 + -2.1
565,304 + -1.7
565,304 + -3.4
565,304 + -2.3
565,304 + -2.3
565,304 + -2.9
565,305 - +0.3
565,323 + -1.8
565,323 + +1.6
565,324 - -2.1
565,324 - -3.0
565,520 - ABZR87_RS02660 0.29 +0.2
565,520 - ABZR87_RS02660 0.29 -0.7
565,551 + ABZR87_RS02660 0.34 +0.8
565,551 + ABZR87_RS02660 0.34 +0.8
565,552 - ABZR87_RS02660 0.34 -0.2
565,552 - ABZR87_RS02660 0.34 +0.9
565,934 + -0.2
565,934 + +1.0
565,934 + -0.7
565,934 + +0.5
565,935 - -0.3
565,935 - -0.7
565,935 - +0.1
565,935 - +0.8
565,961 + -0.0
565,961 + -0.6
566,039 + ABZR87_RS02665 0.18 -0.2
566,039 + ABZR87_RS02665 0.18 +0.7
566,040 - ABZR87_RS02665 0.19 -0.0
566,040 - ABZR87_RS02665 0.19 +0.7
566,099 + ABZR87_RS02665 0.32 -0.3
566,100 - ABZR87_RS02665 0.33 -2.2
566,100 - ABZR87_RS02665 0.33 -0.4
566,207 + ABZR87_RS02665 0.58 +0.3
566,207 + ABZR87_RS02665 0.58 -0.6
566,207 + ABZR87_RS02665 0.58 +0.1
566,208 - ABZR87_RS02665 0.58 +0.2
566,208 - ABZR87_RS02665 0.58 -0.5
566,208 - ABZR87_RS02665 0.58 +0.4
566,208 - ABZR87_RS02665 0.58 -0.2
566,208 - ABZR87_RS02665 0.58 +0.6
566,208 - ABZR87_RS02665 0.58 +1.1

Or see this region's nucleotide sequence