Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02485 and ABZR87_RS02490 are separated by 55 nucleotides ABZR87_RS02490 and ABZR87_RS02495 overlap by 4 nucleotides ABZR87_RS02495 and ABZR87_RS02500 are separated by 16 nucleotides
ABZR87_RS02485: ABZR87_RS02485 - MarC family protein, at 527,484 to 528,107
_RS02485
ABZR87_RS02490: ABZR87_RS02490 - imidazoleglycerol-phosphate dehydratase HisB, at 528,163 to 528,753
_RS02490
ABZR87_RS02495: ABZR87_RS02495 - histidinol-phosphate transaminase, at 528,750 to 529,874
_RS02495
ABZR87_RS02500: ABZR87_RS02500 - histidinol dehydrogenase, at 529,891 to 531,219
_RS02500
Position (kb) 528
529
530 Strain fitness (log2 ratio) -2
-1
0
1
2 at 527.905 kb on - strand, within ABZR87_RS02485 at 528.165 kb on - strand at 528.165 kb on - strand at 528.165 kb on - strand at 528.857 kb on + strand at 528.858 kb on - strand at 528.869 kb on + strand, within ABZR87_RS02495 at 528.870 kb on - strand, within ABZR87_RS02495 at 529.095 kb on - strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.096 kb on + strand, within ABZR87_RS02495 at 529.097 kb on - strand, within ABZR87_RS02495 at 529.151 kb on - strand, within ABZR87_RS02495 at 529.258 kb on + strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.259 kb on - strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.375 kb on + strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.376 kb on - strand, within ABZR87_RS02495 at 529.453 kb on - strand, within ABZR87_RS02495 at 529.495 kb on + strand, within ABZR87_RS02495 at 529.495 kb on + strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.496 kb on - strand, within ABZR87_RS02495 at 529.735 kb on + strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.736 kb on - strand, within ABZR87_RS02495 at 529.789 kb on + strand at 529.790 kb on - strand at 529.790 kb on - strand at 529.902 kb on + strand at 529.902 kb on + strand at 529.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 527,905 - ABZR87_RS02485 0.67 +1.1 528,165 - +0.7 528,165 - +0.7 528,165 - +0.1 528,857 + +0.1 528,858 - +0.7 528,869 + ABZR87_RS02495 0.11 -0.1 528,870 - ABZR87_RS02495 0.11 -0.8 529,095 - ABZR87_RS02495 0.31 +0.0 529,096 + ABZR87_RS02495 0.31 +0.8 529,096 + ABZR87_RS02495 0.31 +0.8 529,096 + ABZR87_RS02495 0.31 -0.2 529,096 + ABZR87_RS02495 0.31 -0.4 529,097 - ABZR87_RS02495 0.31 +0.7 529,151 - ABZR87_RS02495 0.36 +0.1 529,258 + ABZR87_RS02495 0.45 +0.8 529,259 - ABZR87_RS02495 0.45 +0.8 529,259 - ABZR87_RS02495 0.45 -0.3 529,259 - ABZR87_RS02495 0.45 -0.2 529,375 + ABZR87_RS02495 0.56 -0.2 529,375 + ABZR87_RS02495 0.56 +1.0 529,375 + ABZR87_RS02495 0.56 +0.3 529,375 + ABZR87_RS02495 0.56 -0.9 529,375 + ABZR87_RS02495 0.56 +0.7 529,376 - ABZR87_RS02495 0.56 +1.2 529,376 - ABZR87_RS02495 0.56 +0.7 529,376 - ABZR87_RS02495 0.56 -0.6 529,453 - ABZR87_RS02495 0.62 +0.3 529,495 + ABZR87_RS02495 0.66 +0.4 529,495 + ABZR87_RS02495 0.66 +1.1 529,496 - ABZR87_RS02495 0.66 +0.4 529,496 - ABZR87_RS02495 0.66 -1.1 529,496 - ABZR87_RS02495 0.66 -1.1 529,496 - ABZR87_RS02495 0.66 -0.3 529,496 - ABZR87_RS02495 0.66 -2.6 529,735 + ABZR87_RS02495 0.88 +1.3 529,736 - ABZR87_RS02495 0.88 -0.3 529,736 - ABZR87_RS02495 0.88 +0.9 529,736 - ABZR87_RS02495 0.88 -0.3 529,789 + +0.9 529,790 - +1.9 529,790 - +0.1 529,902 + -0.2 529,902 + -0.3 529,903 - +0.0
Or see this region's nucleotide sequence