Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02450

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02440 and ABZR87_RS02445 are separated by 61 nucleotidesABZR87_RS02445 and ABZR87_RS02450 are separated by 20 nucleotidesABZR87_RS02450 and ABZR87_RS02455 are separated by 62 nucleotidesABZR87_RS02455 and ABZR87_RS02460 are separated by 31 nucleotidesABZR87_RS02460 and ABZR87_RS02465 overlap by 8 nucleotides ABZR87_RS02440: ABZR87_RS02440 - twin-arginine translocase subunit TatC, at 522,278 to 523,081 _RS02440 ABZR87_RS02445: ABZR87_RS02445 - Sec-independent protein translocase protein TatB, at 523,143 to 523,655 _RS02445 ABZR87_RS02450: ABZR87_RS02450 - Sec-independent protein translocase subunit TatA, at 523,676 to 523,924 _RS02450 ABZR87_RS02455: ABZR87_RS02455 - membrane protein, at 523,987 to 524,361 _RS02455 ABZR87_RS02460: ABZR87_RS02460 - phosphoribosyl-ATP diphosphatase, at 524,393 to 524,767 _RS02460 ABZR87_RS02465: ABZR87_RS02465 - phosphoribosyl-AMP cyclohydrolase, at 524,760 to 525,182 _RS02465 Position (kb) 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.705 kb on + strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.706 kb on - strand, within ABZR87_RS02440at 522.750 kb on + strand, within ABZR87_RS02440at 522.750 kb on + strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.751 kb on - strand, within ABZR87_RS02440at 522.783 kb on + strand, within ABZR87_RS02440at 522.783 kb on + strand, within ABZR87_RS02440at 522.784 kb on - strand, within ABZR87_RS02440at 522.942 kb on + strand, within ABZR87_RS02440at 522.942 kb on + strand, within ABZR87_RS02440at 523.295 kb on + strand, within ABZR87_RS02445at 523.296 kb on - strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.531 kb on + strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.532 kb on - strand, within ABZR87_RS02445at 523.913 kb on - strandat 523.929 kb on + strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.930 kb on - strandat 523.939 kb on + strandat 523.939 kb on + strandat 523.940 kb on - strandat 523.940 kb on - strandat 523.943 kb on + strandat 523.943 kb on + strandat 523.944 kb on - strandat 524.000 kb on + strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.001 kb on - strandat 524.024 kb on + strandat 524.025 kb on - strand, within ABZR87_RS02455at 524.043 kb on + strand, within ABZR87_RS02455at 524.043 kb on + strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.044 kb on - strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.048 kb on + strand, within ABZR87_RS02455at 524.049 kb on - strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.134 kb on + strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.135 kb on - strand, within ABZR87_RS02455at 524.180 kb on + strand, within ABZR87_RS02455at 524.180 kb on + strand, within ABZR87_RS02455at 524.180 kb on + strand, within ABZR87_RS02455at 524.180 kb on + strand, within ABZR87_RS02455at 524.181 kb on - strand, within ABZR87_RS02455at 524.181 kb on - strand, within ABZR87_RS02455at 524.181 kb on - strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.208 kb on + strand, within ABZR87_RS02455at 524.209 kb on - strand, within ABZR87_RS02455at 524.209 kb on - strand, within ABZR87_RS02455at 524.209 kb on - strand, within ABZR87_RS02455at 524.209 kb on - strand, within ABZR87_RS02455at 524.214 kb on - strand, within ABZR87_RS02455at 524.214 kb on - strand, within ABZR87_RS02455at 524.214 kb on - strand, within ABZR87_RS02455at 524.244 kb on + strand, within ABZR87_RS02455at 524.244 kb on + strand, within ABZR87_RS02455at 524.279 kb on + strand, within ABZR87_RS02455at 524.279 kb on + strand, within ABZR87_RS02455at 524.280 kb on - strand, within ABZR87_RS02455at 524.280 kb on - strand, within ABZR87_RS02455at 524.286 kb on + strand, within ABZR87_RS02455at 524.286 kb on + strand, within ABZR87_RS02455at 524.287 kb on - strand, within ABZR87_RS02455at 524.287 kb on - strand, within ABZR87_RS02455at 524.351 kb on + strandat 524.351 kb on + strandat 524.351 kb on + strandat 524.352 kb on - strandat 524.352 kb on - strandat 524.352 kb on - strandat 524.352 kb on - strandat 524.352 kb on - strandat 524.352 kb on - strandat 524.352 kb on - strandat 524.352 kb on - strandat 524.791 kb on + strandat 524.791 kb on + strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.792 kb on - strandat 524.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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522,705 + ABZR87_RS02440 0.53 -0.4
522,705 + ABZR87_RS02440 0.53 -0.6
522,705 + ABZR87_RS02440 0.53 +0.8
522,705 + ABZR87_RS02440 0.53 -0.8
522,705 + ABZR87_RS02440 0.53 +0.1
522,705 + ABZR87_RS02440 0.53 -3.1
522,705 + ABZR87_RS02440 0.53 -0.4
522,705 + ABZR87_RS02440 0.53 +0.6
522,705 + ABZR87_RS02440 0.53 +0.4
522,705 + ABZR87_RS02440 0.53 -0.6
522,706 - ABZR87_RS02440 0.53 +0.4
522,706 - ABZR87_RS02440 0.53 +1.9
522,706 - ABZR87_RS02440 0.53 -1.4
522,706 - ABZR87_RS02440 0.53 +0.6
522,750 + ABZR87_RS02440 0.59 +0.5
522,750 + ABZR87_RS02440 0.59 -0.4
522,751 - ABZR87_RS02440 0.59 -0.1
522,751 - ABZR87_RS02440 0.59 +0.0
522,751 - ABZR87_RS02440 0.59 +1.2
522,783 + ABZR87_RS02440 0.63 +1.1
522,783 + ABZR87_RS02440 0.63 +0.4
522,784 - ABZR87_RS02440 0.63 +0.7
522,942 + ABZR87_RS02440 0.83 +0.9
522,942 + ABZR87_RS02440 0.83 +1.5
523,295 + ABZR87_RS02445 0.30 +0.9
523,296 - ABZR87_RS02445 0.30 +0.3
523,531 + ABZR87_RS02445 0.76 -0.1
523,531 + ABZR87_RS02445 0.76 +0.1
523,531 + ABZR87_RS02445 0.76 +0.0
523,531 + ABZR87_RS02445 0.76 +0.9
523,532 - ABZR87_RS02445 0.76 -1.0
523,532 - ABZR87_RS02445 0.76 -0.5
523,532 - ABZR87_RS02445 0.76 +1.9
523,532 - ABZR87_RS02445 0.76 -0.2
523,532 - ABZR87_RS02445 0.76 -1.1
523,532 - ABZR87_RS02445 0.76 -1.4
523,913 - -0.9
523,929 + +0.4
523,930 - +0.3
523,930 - +0.2
523,930 - +2.1
523,930 - +1.2
523,930 - -0.6
523,930 - +0.2
523,939 + +1.8
523,939 + -0.4
523,940 - +0.5
523,940 - -1.4
523,943 + -1.6
523,943 + -0.6
523,944 - +0.9
524,000 + +1.0
524,001 - -0.8
524,001 - -1.6
524,001 - -1.1
524,001 - -0.1
524,001 - +0.3
524,024 + -0.6
524,025 - ABZR87_RS02455 0.10 +0.6
524,043 + ABZR87_RS02455 0.15 +0.5
524,043 + ABZR87_RS02455 0.15 +0.6
524,044 - ABZR87_RS02455 0.15 -0.8
524,044 - ABZR87_RS02455 0.15 +1.1
524,044 - ABZR87_RS02455 0.15 +0.7
524,044 - ABZR87_RS02455 0.15 +0.3
524,048 + ABZR87_RS02455 0.16 -0.4
524,048 + ABZR87_RS02455 0.16 -0.2
524,048 + ABZR87_RS02455 0.16 +0.5
524,048 + ABZR87_RS02455 0.16 +0.6
524,049 - ABZR87_RS02455 0.17 +1.0
524,134 + ABZR87_RS02455 0.39 -0.3
524,134 + ABZR87_RS02455 0.39 -0.7
524,134 + ABZR87_RS02455 0.39 +0.1
524,134 + ABZR87_RS02455 0.39 +0.3
524,134 + ABZR87_RS02455 0.39 +0.4
524,134 + ABZR87_RS02455 0.39 +0.7
524,134 + ABZR87_RS02455 0.39 +0.3
524,134 + ABZR87_RS02455 0.39 -0.6
524,134 + ABZR87_RS02455 0.39 +0.7
524,135 - ABZR87_RS02455 0.39 +0.2
524,135 - ABZR87_RS02455 0.39 -1.1
524,135 - ABZR87_RS02455 0.39 -0.3
524,135 - ABZR87_RS02455 0.39 +1.0
524,135 - ABZR87_RS02455 0.39 -0.7
524,135 - ABZR87_RS02455 0.39 -0.9
524,135 - ABZR87_RS02455 0.39 +0.5
524,135 - ABZR87_RS02455 0.39 -0.2
524,135 - ABZR87_RS02455 0.39 +0.1
524,180 + ABZR87_RS02455 0.51 -0.2
524,180 + ABZR87_RS02455 0.51 +0.9
524,180 + ABZR87_RS02455 0.51 +0.6
524,180 + ABZR87_RS02455 0.51 +0.6
524,181 - ABZR87_RS02455 0.52 -0.4
524,181 - ABZR87_RS02455 0.52 +0.6
524,181 - ABZR87_RS02455 0.52 -0.4
524,208 + ABZR87_RS02455 0.59 +0.2
524,208 + ABZR87_RS02455 0.59 +0.4
524,208 + ABZR87_RS02455 0.59 -0.5
524,208 + ABZR87_RS02455 0.59 -0.6
524,208 + ABZR87_RS02455 0.59 -1.1
524,208 + ABZR87_RS02455 0.59 +0.8
524,208 + ABZR87_RS02455 0.59 -0.5
524,208 + ABZR87_RS02455 0.59 -1.0
524,208 + ABZR87_RS02455 0.59 -0.6
524,209 - ABZR87_RS02455 0.59 +0.2
524,209 - ABZR87_RS02455 0.59 -0.1
524,209 - ABZR87_RS02455 0.59 -0.1
524,209 - ABZR87_RS02455 0.59 +0.1
524,214 - ABZR87_RS02455 0.61 -0.2
524,214 - ABZR87_RS02455 0.61 +0.1
524,214 - ABZR87_RS02455 0.61 +0.3
524,244 + ABZR87_RS02455 0.69 +0.9
524,244 + ABZR87_RS02455 0.69 +0.3
524,279 + ABZR87_RS02455 0.78 +1.2
524,279 + ABZR87_RS02455 0.78 +0.8
524,280 - ABZR87_RS02455 0.78 -0.6
524,280 - ABZR87_RS02455 0.78 -0.2
524,286 + ABZR87_RS02455 0.80 +0.0
524,286 + ABZR87_RS02455 0.80 +0.0
524,287 - ABZR87_RS02455 0.80 +0.3
524,287 - ABZR87_RS02455 0.80 -0.1
524,351 + +0.6
524,351 + +0.3
524,351 + -0.4
524,352 - -0.6
524,352 - +0.4
524,352 - -0.4
524,352 - +1.7
524,352 - +1.0
524,352 - -0.8
524,352 - -0.0
524,352 - -0.3
524,791 + -0.3
524,791 + +0.1
524,792 - +0.4
524,792 - +0.0
524,792 - +1.0
524,792 - +0.7
524,792 - -0.2
524,792 - +1.5
524,792 - -0.1

Or see this region's nucleotide sequence