Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02200 and ABZR87_RS02205 are separated by 10 nucleotides ABZR87_RS02205 and ABZR87_RS02210 are separated by 24 nucleotides ABZR87_RS02210 and ABZR87_RS02215 are separated by 31 nucleotides ABZR87_RS02215 and ABZR87_RS02220 are separated by 411 nucleotides
ABZR87_RS02200: ABZR87_RS02200 - hypothetical protein, at 473,113 to 473,502
_RS02200
ABZR87_RS02205: ABZR87_RS02205 - hypothetical protein, at 473,513 to 473,854
_RS02205
ABZR87_RS02210: ABZR87_RS02210 - lytic transglycosylase domain-containing protein, at 473,879 to 474,352
_RS02210
ABZR87_RS02215: ABZR87_RS02215 - flagellar protein FliT, at 474,384 to 474,761
_RS02215
ABZR87_RS02220: ABZR87_RS02220 - redox-regulated ATPase YchF, at 475,173 to 476,267
_RS02220
Position (kb) 473
474
475 Strain fitness (log2 ratio) -2
-1
0
1
2 at 472.884 kb on + strand at 472.884 kb on + strand at 472.884 kb on + strand at 472.885 kb on - strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.921 kb on + strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.922 kb on - strand at 472.943 kb on + strand at 472.944 kb on - strand at 472.944 kb on - strand at 472.989 kb on + strand at 472.989 kb on + strand at 472.989 kb on + strand at 472.989 kb on + strand at 472.990 kb on - strand at 472.990 kb on - strand at 472.990 kb on - strand at 473.033 kb on + strand at 473.034 kb on - strand at 473.034 kb on - strand at 473.034 kb on - strand at 473.034 kb on - strand at 473.034 kb on - strand at 473.077 kb on + strand at 473.077 kb on + strand at 473.077 kb on + strand at 473.077 kb on + strand at 473.078 kb on - strand at 473.078 kb on - strand at 473.168 kb on + strand, within ABZR87_RS02200 at 473.168 kb on + strand, within ABZR87_RS02200 at 473.384 kb on - strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.431 kb on + strand, within ABZR87_RS02200 at 473.432 kb on - strand, within ABZR87_RS02200 at 473.432 kb on - strand, within ABZR87_RS02200 at 473.432 kb on - strand, within ABZR87_RS02200 at 473.473 kb on + strand at 473.473 kb on + strand at 473.474 kb on - strand at 473.474 kb on - strand at 473.474 kb on - strand at 473.474 kb on - strand at 473.500 kb on + strand at 473.500 kb on + strand at 473.501 kb on - strand at 473.501 kb on - strand at 473.501 kb on - strand at 473.501 kb on - strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.518 kb on + strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.519 kb on - strand at 473.637 kb on - strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.807 kb on + strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.808 kb on - strand, within ABZR87_RS02205 at 473.852 kb on + strand at 473.852 kb on + strand at 473.852 kb on + strand at 473.852 kb on + strand at 473.853 kb on - strand at 473.853 kb on - strand at 473.853 kb on - strand at 473.853 kb on - strand at 473.999 kb on + strand, within ABZR87_RS02210 at 473.999 kb on + strand, within ABZR87_RS02210 at 473.999 kb on + strand, within ABZR87_RS02210 at 474.000 kb on - strand, within ABZR87_RS02210 at 474.000 kb on - strand, within ABZR87_RS02210 at 474.260 kb on + strand, within ABZR87_RS02210 at 474.261 kb on - strand, within ABZR87_RS02210 at 474.261 kb on - strand, within ABZR87_RS02210 at 474.293 kb on + strand, within ABZR87_RS02210 at 474.293 kb on + strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.388 kb on + strand at 474.388 kb on + strand at 474.388 kb on + strand at 474.388 kb on + strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.406 kb on + strand at 474.406 kb on + strand at 474.688 kb on + strand, within ABZR87_RS02215 at 474.688 kb on + strand, within ABZR87_RS02215 at 474.689 kb on - strand, within ABZR87_RS02215 at 474.689 kb on - strand, within ABZR87_RS02215 at 474.722 kb on + strand, within ABZR87_RS02215 at 474.722 kb on + strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.809 kb on + strand at 474.809 kb on - strand at 474.810 kb on - strand at 474.810 kb on - strand at 474.810 kb on - strand at 474.954 kb on + strand at 474.954 kb on + strand at 474.955 kb on - strand at 474.969 kb on + strand at 474.970 kb on - strand at 474.970 kb on - strand at 474.977 kb on - strand at 475.072 kb on - strand at 475.214 kb on + strand at 475.214 kb on + strand at 475.215 kb on - strand at 475.266 kb on + strand at 475.267 kb on - strand at 475.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 472,884 + -0.4 472,884 + +0.6 472,884 + +0.0 472,885 - -0.4 472,921 + -0.2 472,921 + +0.4 472,921 + +0.5 472,921 + -1.0 472,921 + +1.2 472,921 + -0.2 472,921 + +1.0 472,921 + +0.6 472,921 + +0.3 472,921 + +1.0 472,921 + +0.5 472,921 + +0.1 472,921 + +0.3 472,921 + -0.6 472,921 + -0.1 472,921 + +0.0 472,922 - -0.4 472,922 - -1.0 472,922 - +0.7 472,922 - +0.7 472,922 - +0.5 472,922 - -0.1 472,922 - -0.3 472,922 - -0.4 472,922 - +0.1 472,922 - +1.2 472,922 - +0.0 472,922 - -0.4 472,922 - -0.4 472,943 + -0.1 472,944 - -0.2 472,944 - -1.6 472,989 + +0.9 472,989 + -0.5 472,989 + -0.1 472,989 + +0.4 472,990 - -1.7 472,990 - -0.6 472,990 - -0.8 473,033 + -1.5 473,034 - -0.9 473,034 - -0.6 473,034 - -0.6 473,034 - +0.1 473,034 - +1.9 473,077 + +1.0 473,077 + -0.0 473,077 + +0.2 473,077 + -0.4 473,078 - -0.2 473,078 - -1.0 473,168 + ABZR87_RS02200 0.14 -0.1 473,168 + ABZR87_RS02200 0.14 -0.7 473,384 - ABZR87_RS02200 0.69 +0.1 473,431 + ABZR87_RS02200 0.82 -0.5 473,431 + ABZR87_RS02200 0.82 -1.1 473,431 + ABZR87_RS02200 0.82 +0.4 473,431 + ABZR87_RS02200 0.82 -0.5 473,432 - ABZR87_RS02200 0.82 -0.5 473,432 - ABZR87_RS02200 0.82 -0.6 473,432 - ABZR87_RS02200 0.82 +0.7 473,473 + -0.9 473,473 + -0.4 473,474 - -0.0 473,474 - +0.6 473,474 - -0.6 473,474 - +0.2 473,500 + +0.0 473,500 + +0.0 473,501 - -0.9 473,501 - -1.1 473,501 - +0.1 473,501 - +0.9 473,518 + -0.2 473,518 + -0.1 473,518 + +0.1 473,518 + -0.0 473,518 + +0.2 473,518 + -0.8 473,518 + -0.9 473,518 + -0.5 473,518 + +0.6 473,519 - -0.4 473,519 - +0.4 473,519 - +0.3 473,519 - +0.5 473,519 - -0.6 473,519 - +0.5 473,519 - +0.7 473,519 - -1.0 473,519 - +0.6 473,637 - ABZR87_RS02205 0.36 +0.5 473,807 + ABZR87_RS02205 0.86 -0.8 473,807 + ABZR87_RS02205 0.86 +0.1 473,807 + ABZR87_RS02205 0.86 +1.1 473,807 + ABZR87_RS02205 0.86 +0.4 473,807 + ABZR87_RS02205 0.86 +1.1 473,807 + ABZR87_RS02205 0.86 -0.5 473,807 + ABZR87_RS02205 0.86 -0.6 473,808 - ABZR87_RS02205 0.86 +0.5 473,808 - ABZR87_RS02205 0.86 -0.2 473,808 - ABZR87_RS02205 0.86 +0.8 473,808 - ABZR87_RS02205 0.86 +0.7 473,808 - ABZR87_RS02205 0.86 -0.7 473,808 - ABZR87_RS02205 0.86 -0.7 473,808 - ABZR87_RS02205 0.86 -0.0 473,808 - ABZR87_RS02205 0.86 -2.1 473,808 - ABZR87_RS02205 0.86 +0.0 473,808 - ABZR87_RS02205 0.86 +0.4 473,808 - ABZR87_RS02205 0.86 +1.0 473,808 - ABZR87_RS02205 0.86 -0.2 473,808 - ABZR87_RS02205 0.86 -0.1 473,852 + -0.1 473,852 + -1.4 473,852 + -0.6 473,852 + +0.7 473,853 - -0.9 473,853 - -0.2 473,853 - -0.0 473,853 - -0.8 473,999 + ABZR87_RS02210 0.25 -0.1 473,999 + ABZR87_RS02210 0.25 +0.3 473,999 + ABZR87_RS02210 0.25 +0.3 474,000 - ABZR87_RS02210 0.26 +1.4 474,000 - ABZR87_RS02210 0.26 +1.0 474,260 + ABZR87_RS02210 0.80 -1.5 474,261 - ABZR87_RS02210 0.81 +1.0 474,261 - ABZR87_RS02210 0.81 +0.4 474,293 + ABZR87_RS02210 0.87 -0.8 474,293 + ABZR87_RS02210 0.87 -0.9 474,294 - ABZR87_RS02210 0.88 +1.8 474,294 - ABZR87_RS02210 0.88 -1.2 474,294 - ABZR87_RS02210 0.88 +1.2 474,388 + +0.3 474,388 + +0.2 474,388 + -0.5 474,388 + -0.7 474,389 - -0.5 474,389 - +0.9 474,389 - -0.1 474,389 - +1.3 474,391 + -1.4 474,391 + +0.4 474,391 + +0.5 474,392 - +0.4 474,392 - -0.3 474,392 - +0.2 474,392 - +1.2 474,406 + -0.5 474,406 + +0.4 474,688 + ABZR87_RS02215 0.80 -1.1 474,688 + ABZR87_RS02215 0.80 -0.5 474,689 - ABZR87_RS02215 0.81 +0.2 474,689 - ABZR87_RS02215 0.81 +0.4 474,722 + ABZR87_RS02215 0.89 +0.4 474,722 + ABZR87_RS02215 0.89 -0.4 474,723 - ABZR87_RS02215 0.90 +0.2 474,723 - ABZR87_RS02215 0.90 +0.2 474,723 - ABZR87_RS02215 0.90 +0.5 474,809 + -0.7 474,809 - +1.0 474,810 - +0.5 474,810 - -0.3 474,810 - +0.2 474,954 + +0.2 474,954 + -0.2 474,955 - +0.3 474,969 + -0.0 474,970 - +0.2 474,970 - +0.4 474,977 - +0.1 475,072 - -0.7 475,214 + -2.0 475,214 + -2.2 475,215 - -2.0 475,266 + -0.0 475,267 - -2.5 475,267 - -2.7
Or see this region's nucleotide sequence