Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01545 and ABZR87_RS01550 are separated by 33 nucleotides ABZR87_RS01550 and ABZR87_RS01555 are separated by 101 nucleotides ABZR87_RS01555 and ABZR87_RS01560 overlap by 4 nucleotides
ABZR87_RS01545: ABZR87_RS01545 - L-arabinose ABC transporter ATP-binding protein AraG, at 325,086 to 326,615
_RS01545
ABZR87_RS01550: ABZR87_RS01550 - L-arabinose ABC transporter permease AraH, at 326,649 to 327,659
_RS01550
ABZR87_RS01555: ABZR87_RS01555 - barstar family protein, at 327,761 to 328,384
_RS01555
ABZR87_RS01560: ABZR87_RS01560 - ribonuclease domain-containing protein, at 328,381 to 328,812
_RS01560
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.740 kb on + strand, within ABZR87_RS01545 at 325.740 kb on + strand, within ABZR87_RS01545 at 325.741 kb on - strand, within ABZR87_RS01545 at 325.741 kb on - strand, within ABZR87_RS01545 at 325.866 kb on + strand, within ABZR87_RS01545 at 325.867 kb on - strand, within ABZR87_RS01545 at 325.867 kb on - strand, within ABZR87_RS01545 at 325.872 kb on + strand, within ABZR87_RS01545 at 325.872 kb on + strand, within ABZR87_RS01545 at 325.922 kb on - strand, within ABZR87_RS01545 at 326.029 kb on - strand, within ABZR87_RS01545 at 326.433 kb on + strand, within ABZR87_RS01545 at 326.433 kb on + strand, within ABZR87_RS01545 at 326.434 kb on - strand, within ABZR87_RS01545 at 326.434 kb on - strand, within ABZR87_RS01545 at 326.445 kb on + strand, within ABZR87_RS01545 at 326.445 kb on + strand, within ABZR87_RS01545 at 326.445 kb on + strand, within ABZR87_RS01545 at 326.446 kb on - strand, within ABZR87_RS01545 at 326.446 kb on - strand, within ABZR87_RS01545 at 326.446 kb on - strand, within ABZR87_RS01545 at 326.648 kb on + strand at 326.648 kb on + strand at 326.648 kb on + strand at 326.648 kb on + strand at 326.648 kb on + strand at 326.649 kb on - strand at 326.649 kb on - strand at 326.707 kb on + strand at 326.707 kb on + strand at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.976 kb on - strand, within ABZR87_RS01550 at 327.054 kb on + strand, within ABZR87_RS01550 at 327.055 kb on - strand, within ABZR87_RS01550 at 327.198 kb on + strand, within ABZR87_RS01550 at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.585 kb on + strand at 327.585 kb on + strand at 327.586 kb on - strand at 327.586 kb on - strand at 327.586 kb on - strand at 328.294 kb on - strand, within ABZR87_RS01555 at 328.294 kb on - strand, within ABZR87_RS01555 at 328.390 kb on + strand at 328.409 kb on + strand at 328.409 kb on + strand at 328.410 kb on - strand at 328.410 kb on - strand at 328.410 kb on - strand at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.427 kb on + strand, within ABZR87_RS01560 at 328.428 kb on - strand, within ABZR87_RS01560 at 328.428 kb on - strand, within ABZR87_RS01560 at 328.521 kb on - strand, within ABZR87_RS01560 at 328.521 kb on - strand, within ABZR87_RS01560 at 328.556 kb on + strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.586 kb on + strand, within ABZR87_RS01560 at 328.587 kb on - strand, within ABZR87_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 325,713 + ABZR87_RS01545 0.41 +1.5 325,713 + ABZR87_RS01545 0.41 +1.6 325,713 + ABZR87_RS01545 0.41 -0.1 325,713 + ABZR87_RS01545 0.41 -0.4 325,714 - ABZR87_RS01545 0.41 -0.4 325,714 - ABZR87_RS01545 0.41 +0.4 325,714 - ABZR87_RS01545 0.41 +0.2 325,740 + ABZR87_RS01545 0.43 -0.6 325,740 + ABZR87_RS01545 0.43 -0.0 325,741 - ABZR87_RS01545 0.43 -1.1 325,741 - ABZR87_RS01545 0.43 +1.1 325,866 + ABZR87_RS01545 0.51 +0.1 325,867 - ABZR87_RS01545 0.51 +0.5 325,867 - ABZR87_RS01545 0.51 +1.0 325,872 + ABZR87_RS01545 0.51 -1.0 325,872 + ABZR87_RS01545 0.51 -0.2 325,922 - ABZR87_RS01545 0.55 +0.8 326,029 - ABZR87_RS01545 0.62 -0.5 326,433 + ABZR87_RS01545 0.88 +1.0 326,433 + ABZR87_RS01545 0.88 +0.6 326,434 - ABZR87_RS01545 0.88 -0.3 326,434 - ABZR87_RS01545 0.88 -1.8 326,445 + ABZR87_RS01545 0.89 +0.6 326,445 + ABZR87_RS01545 0.89 -0.7 326,445 + ABZR87_RS01545 0.89 +0.8 326,446 - ABZR87_RS01545 0.89 +0.2 326,446 - ABZR87_RS01545 0.89 -0.6 326,446 - ABZR87_RS01545 0.89 +0.2 326,648 + +0.8 326,648 + +0.4 326,648 + +0.2 326,648 + +0.3 326,648 + +0.5 326,649 - -1.1 326,649 - +0.7 326,707 + +0.5 326,707 + +0.5 326,975 + ABZR87_RS01550 0.32 +0.0 326,975 + ABZR87_RS01550 0.32 -0.4 326,975 + ABZR87_RS01550 0.32 +0.1 326,976 - ABZR87_RS01550 0.32 +0.5 327,054 + ABZR87_RS01550 0.40 +0.7 327,055 - ABZR87_RS01550 0.40 +0.7 327,198 + ABZR87_RS01550 0.54 -0.3 327,579 + +0.5 327,579 + +0.6 327,579 + -1.0 327,579 + +0.3 327,579 + -1.3 327,579 + +0.4 327,579 + +0.9 327,579 + +1.4 327,579 + -0.7 327,579 + +0.9 327,579 + +0.4 327,579 + +0.7 327,580 - +0.6 327,580 - -0.4 327,580 - +0.1 327,580 - +0.9 327,580 - -0.1 327,580 - -1.6 327,585 + +0.4 327,585 + +0.2 327,586 - +0.7 327,586 - +0.3 327,586 - -0.2 328,294 - ABZR87_RS01555 0.85 +1.8 328,294 - ABZR87_RS01555 0.85 +1.6 328,390 + +0.0 328,409 + +0.4 328,409 + -0.3 328,410 - -0.4 328,410 - +0.8 328,410 - -0.4 328,425 - ABZR87_RS01560 0.10 -0.1 328,425 - ABZR87_RS01560 0.10 +0.1 328,425 - ABZR87_RS01560 0.10 +0.6 328,425 - ABZR87_RS01560 0.10 +0.9 328,425 - ABZR87_RS01560 0.10 -0.1 328,427 + ABZR87_RS01560 0.11 +2.0 328,428 - ABZR87_RS01560 0.11 -0.2 328,428 - ABZR87_RS01560 0.11 +1.4 328,521 - ABZR87_RS01560 0.32 +0.2 328,521 - ABZR87_RS01560 0.32 +0.2 328,556 + ABZR87_RS01560 0.41 +1.0 328,557 - ABZR87_RS01560 0.41 +0.6 328,557 - ABZR87_RS01560 0.41 -0.3 328,557 - ABZR87_RS01560 0.41 +0.0 328,586 + ABZR87_RS01560 0.47 +3.4 328,587 - ABZR87_RS01560 0.48 -0.4
Or see this region's nucleotide sequence