Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00465 and ABZR87_RS00470 are separated by 278 nucleotides ABZR87_RS00470 and ABZR87_RS00475 are separated by 187 nucleotides ABZR87_RS00475 and ABZR87_RS00480 overlap by 4 nucleotides
ABZR87_RS00465: ABZR87_RS00465 - sorbitol dehydrogenase family protein, at 96,723 to 97,205
_RS00465
ABZR87_RS00470: ABZR87_RS00470 - hypothetical protein, at 97,484 to 97,693
_RS00470
ABZR87_RS00475: ABZR87_RS00475 - metallophosphoesterase, at 97,881 to 99,395
_RS00475
ABZR87_RS00480: ABZR87_RS00480 - cytochrome-c peroxidase, at 99,392 to 100,723
_RS00480
Position (kb) 97
98
99
100 Strain fitness (log2 ratio) -1
0
1
2
3 at 97.422 kb on + strand at 97.440 kb on + strand at 97.455 kb on + strand at 97.455 kb on + strand at 97.456 kb on - strand at 97.469 kb on - strand at 97.470 kb on + strand at 97.471 kb on - strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.691 kb on + strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.692 kb on - strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.749 kb on + strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.750 kb on - strand at 97.821 kb on + strand at 97.822 kb on - strand at 97.840 kb on + strand at 97.841 kb on - strand at 97.841 kb on - strand at 97.841 kb on - strand at 98.118 kb on + strand, within ABZR87_RS00475 at 98.118 kb on + strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.119 kb on - strand, within ABZR87_RS00475 at 98.120 kb on + strand, within ABZR87_RS00475 at 98.120 kb on + strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475 at 98.121 kb on - strand, within ABZR87_RS00475 at 98.514 kb on + strand, within ABZR87_RS00475 at 98.514 kb on + strand, within ABZR87_RS00475 at 98.515 kb on - strand, within ABZR87_RS00475 at 98.578 kb on - strand, within ABZR87_RS00475 at 98.588 kb on + strand, within ABZR87_RS00475 at 98.589 kb on - strand, within ABZR87_RS00475 at 98.589 kb on - strand, within ABZR87_RS00475 at 98.784 kb on + strand, within ABZR87_RS00475 at 98.785 kb on - strand, within ABZR87_RS00475 at 98.785 kb on - strand, within ABZR87_RS00475 at 98.808 kb on - strand, within ABZR87_RS00475 at 98.808 kb on - strand, within ABZR87_RS00475 at 98.883 kb on + strand, within ABZR87_RS00475 at 98.883 kb on + strand, within ABZR87_RS00475 at 98.884 kb on - strand, within ABZR87_RS00475 at 98.884 kb on - strand, within ABZR87_RS00475 at 98.945 kb on + strand, within ABZR87_RS00475 at 98.946 kb on - strand, within ABZR87_RS00475 at 99.051 kb on + strand, within ABZR87_RS00475 at 99.051 kb on + strand, within ABZR87_RS00475 at 99.051 kb on + strand, within ABZR87_RS00475 at 99.051 kb on + strand, within ABZR87_RS00475 at 99.051 kb on + strand, within ABZR87_RS00475 at 99.052 kb on - strand, within ABZR87_RS00475 at 99.052 kb on - strand, within ABZR87_RS00475 at 99.052 kb on - strand, within ABZR87_RS00475 at 99.052 kb on - strand, within ABZR87_RS00475 at 99.052 kb on - strand, within ABZR87_RS00475 at 99.052 kb on - strand, within ABZR87_RS00475 at 99.052 kb on - strand, within ABZR87_RS00475 at 99.309 kb on + strand at 99.309 kb on + strand at 99.309 kb on + strand at 99.310 kb on - strand at 99.310 kb on - strand at 99.310 kb on - strand at 99.310 kb on - strand at 99.310 kb on - strand at 99.310 kb on - strand at 99.722 kb on + strand, within ABZR87_RS00480 at 99.722 kb on + strand, within ABZR87_RS00480 at 99.722 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.731 kb on + strand, within ABZR87_RS00480 at 99.732 kb on - strand, within ABZR87_RS00480 at 99.746 kb on + strand, within ABZR87_RS00480 at 99.747 kb on - strand, within ABZR87_RS00480 at 100.005 kb on - strand, within ABZR87_RS00480 at 100.005 kb on - strand, within ABZR87_RS00480 at 100.005 kb on - strand, within ABZR87_RS00480 at 100.200 kb on - strand, within ABZR87_RS00480
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 97,422 + +0.3 97,440 + -0.3 97,455 + -0.8 97,455 + +0.4 97,456 - +0.3 97,469 - -1.1 97,470 + +1.3 97,471 - -0.2 97,691 + -0.7 97,691 + +0.1 97,691 + -0.7 97,691 + +0.3 97,691 + -0.4 97,692 - -0.1 97,692 - -0.6 97,692 - +1.0 97,692 - -0.8 97,692 - -0.3 97,692 - +1.3 97,692 - +0.4 97,692 - +0.3 97,692 - +0.4 97,749 + +1.2 97,749 + -0.2 97,749 + +2.0 97,749 + -0.5 97,749 + -1.1 97,749 + +0.4 97,750 - +0.5 97,750 - +1.0 97,750 - +0.5 97,750 - +0.1 97,750 - -1.7 97,750 - -1.0 97,750 - +0.2 97,750 - +0.5 97,821 + -0.1 97,822 - -0.3 97,840 + -0.2 97,841 - +0.8 97,841 - +0.0 97,841 - +1.0 98,118 + ABZR87_RS00475 0.16 +1.2 98,118 + ABZR87_RS00475 0.16 +0.8 98,119 - ABZR87_RS00475 0.16 +0.3 98,119 - ABZR87_RS00475 0.16 -0.9 98,119 - ABZR87_RS00475 0.16 +0.5 98,119 - ABZR87_RS00475 0.16 +0.8 98,119 - ABZR87_RS00475 0.16 -0.7 98,119 - ABZR87_RS00475 0.16 -0.0 98,119 - ABZR87_RS00475 0.16 -0.4 98,120 + ABZR87_RS00475 0.16 +0.8 98,120 + ABZR87_RS00475 0.16 -1.1 98,121 - ABZR87_RS00475 0.16 -0.1 98,121 - ABZR87_RS00475 0.16 +0.4 98,121 - ABZR87_RS00475 0.16 +0.4 98,514 + ABZR87_RS00475 0.42 -0.8 98,514 + ABZR87_RS00475 0.42 +1.2 98,515 - ABZR87_RS00475 0.42 -0.2 98,578 - ABZR87_RS00475 0.46 -0.3 98,588 + ABZR87_RS00475 0.47 +0.7 98,589 - ABZR87_RS00475 0.47 -0.1 98,589 - ABZR87_RS00475 0.47 +0.3 98,784 + ABZR87_RS00475 0.60 +0.1 98,785 - ABZR87_RS00475 0.60 +0.4 98,785 - ABZR87_RS00475 0.60 -0.8 98,808 - ABZR87_RS00475 0.61 +0.3 98,808 - ABZR87_RS00475 0.61 -0.2 98,883 + ABZR87_RS00475 0.66 -0.1 98,883 + ABZR87_RS00475 0.66 +1.1 98,884 - ABZR87_RS00475 0.66 +0.1 98,884 - ABZR87_RS00475 0.66 +0.2 98,945 + ABZR87_RS00475 0.70 +0.6 98,946 - ABZR87_RS00475 0.70 +0.7 99,051 + ABZR87_RS00475 0.77 +1.0 99,051 + ABZR87_RS00475 0.77 +0.0 99,051 + ABZR87_RS00475 0.77 +3.0 99,051 + ABZR87_RS00475 0.77 -0.1 99,051 + ABZR87_RS00475 0.77 +0.9 99,052 - ABZR87_RS00475 0.77 +0.9 99,052 - ABZR87_RS00475 0.77 +0.2 99,052 - ABZR87_RS00475 0.77 +1.8 99,052 - ABZR87_RS00475 0.77 +0.3 99,052 - ABZR87_RS00475 0.77 -0.1 99,052 - ABZR87_RS00475 0.77 +0.0 99,052 - ABZR87_RS00475 0.77 -1.6 99,309 + -1.0 99,309 + -0.4 99,309 + +0.1 99,310 - -0.3 99,310 - -0.8 99,310 - -1.0 99,310 - -0.7 99,310 - +0.2 99,310 - +0.5 99,722 + ABZR87_RS00480 0.25 +0.4 99,722 + ABZR87_RS00480 0.25 +0.6 99,722 + ABZR87_RS00480 0.25 -1.3 99,731 + ABZR87_RS00480 0.25 -0.8 99,731 + ABZR87_RS00480 0.25 -0.2 99,731 + ABZR87_RS00480 0.25 +0.3 99,731 + ABZR87_RS00480 0.25 +0.0 99,731 + ABZR87_RS00480 0.25 -0.3 99,731 + ABZR87_RS00480 0.25 -0.4 99,731 + ABZR87_RS00480 0.25 -0.1 99,731 + ABZR87_RS00480 0.25 +0.9 99,732 - ABZR87_RS00480 0.26 -1.0 99,746 + ABZR87_RS00480 0.27 -0.8 99,747 - ABZR87_RS00480 0.27 -1.1 100,005 - ABZR87_RS00480 0.46 -0.1 100,005 - ABZR87_RS00480 0.46 -0.1 100,005 - ABZR87_RS00480 0.46 -0.8 100,200 - ABZR87_RS00480 0.61 +0.0
Or see this region's nucleotide sequence