Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00435 and ABZR87_RS00440 overlap by 4 nucleotides ABZR87_RS00440 and ABZR87_RS00445 are separated by 576 nucleotides ABZR87_RS00445 and ABZR87_RS00450 are separated by 185 nucleotides
ABZR87_RS00435: ABZR87_RS00435 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 89,712 to 92,000
_RS00435
ABZR87_RS00440: ABZR87_RS00440 - ATP-dependent Clp protease adapter ClpS, at 91,997 to 92,323
_RS00440
ABZR87_RS00445: ABZR87_RS00445 - cold-shock protein, at 92,900 to 93,103
_RS00445
ABZR87_RS00450: ABZR87_RS00450 - DUF2501 domain-containing protein, at 93,289 to 93,744
_RS00450
Position (kb) 91
92
93 Strain fitness (log2 ratio) -1
0
1
2
3 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.018 kb on + strand, within ABZR87_RS00435 at 91.019 kb on - strand, within ABZR87_RS00435 at 91.222 kb on + strand, within ABZR87_RS00435 at 91.223 kb on - strand, within ABZR87_RS00435 at 91.223 kb on - strand, within ABZR87_RS00435 at 91.262 kb on - strand, within ABZR87_RS00435 at 91.262 kb on - strand, within ABZR87_RS00435 at 91.262 kb on - strand, within ABZR87_RS00435 at 91.630 kb on + strand, within ABZR87_RS00435 at 91.630 kb on + strand, within ABZR87_RS00435 at 91.630 kb on + strand, within ABZR87_RS00435 at 91.631 kb on - strand, within ABZR87_RS00435 at 91.631 kb on - strand, within ABZR87_RS00435 at 91.631 kb on - strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.633 kb on + strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.634 kb on - strand, within ABZR87_RS00435 at 91.925 kb on + strand at 91.926 kb on - strand at 91.926 kb on - strand at 92.054 kb on + strand, within ABZR87_RS00440 at 92.054 kb on + strand, within ABZR87_RS00440 at 92.054 kb on + strand, within ABZR87_RS00440 at 92.055 kb on - strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.091 kb on + strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.092 kb on - strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.095 kb on + strand, within ABZR87_RS00440 at 92.096 kb on - strand, within ABZR87_RS00440 at 92.096 kb on - strand, within ABZR87_RS00440 at 92.110 kb on + strand, within ABZR87_RS00440 at 92.111 kb on - strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.169 kb on + strand, within ABZR87_RS00440 at 92.170 kb on - strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.208 kb on + strand, within ABZR87_RS00440 at 92.209 kb on - strand, within ABZR87_RS00440 at 92.209 kb on - strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.235 kb on + strand, within ABZR87_RS00440 at 92.236 kb on - strand, within ABZR87_RS00440 at 92.236 kb on - strand, within ABZR87_RS00440 at 92.236 kb on - strand, within ABZR87_RS00440 at 92.329 kb on + strand at 92.329 kb on + strand at 92.330 kb on - strand at 92.330 kb on - strand at 92.334 kb on + strand at 92.335 kb on - strand at 92.335 kb on - strand at 92.369 kb on - strand at 92.369 kb on - strand at 92.369 kb on - strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.387 kb on + strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.388 kb on - strand at 92.445 kb on - strand at 92.445 kb on - strand at 92.445 kb on - strand at 92.507 kb on + strand at 92.507 kb on + strand at 92.540 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.580 kb on + strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.581 kb on - strand at 92.640 kb on - strand at 92.858 kb on + strand at 92.859 kb on - strand at 92.859 kb on - strand at 92.859 kb on - strand at 92.884 kb on + strand at 92.885 kb on - strand at 92.927 kb on - strand, within ABZR87_RS00445 at 93.082 kb on + strand, within ABZR87_RS00445 at 93.082 kb on + strand, within ABZR87_RS00445 at 93.083 kb on - strand at 93.247 kb on + strand at 93.247 kb on + strand at 93.247 kb on + strand at 93.248 kb on - strand at 93.248 kb on - strand at 93.257 kb on + strand at 93.257 kb on + strand at 93.258 kb on - strand at 93.258 kb on - strand at 93.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 91,018 + ABZR87_RS00435 0.57 +1.8 91,018 + ABZR87_RS00435 0.57 +3.7 91,018 + ABZR87_RS00435 0.57 +1.8 91,018 + ABZR87_RS00435 0.57 +2.3 91,019 - ABZR87_RS00435 0.57 +3.0 91,222 + ABZR87_RS00435 0.66 +0.8 91,223 - ABZR87_RS00435 0.66 +0.7 91,223 - ABZR87_RS00435 0.66 -0.1 91,262 - ABZR87_RS00435 0.68 +1.2 91,262 - ABZR87_RS00435 0.68 +1.5 91,262 - ABZR87_RS00435 0.68 +1.4 91,630 + ABZR87_RS00435 0.84 +0.8 91,630 + ABZR87_RS00435 0.84 +1.7 91,630 + ABZR87_RS00435 0.84 +1.3 91,631 - ABZR87_RS00435 0.84 -0.1 91,631 - ABZR87_RS00435 0.84 +0.7 91,631 - ABZR87_RS00435 0.84 +1.9 91,633 + ABZR87_RS00435 0.84 +1.0 91,633 + ABZR87_RS00435 0.84 +0.2 91,633 + ABZR87_RS00435 0.84 +2.3 91,633 + ABZR87_RS00435 0.84 +1.7 91,633 + ABZR87_RS00435 0.84 +1.2 91,634 - ABZR87_RS00435 0.84 +2.0 91,634 - ABZR87_RS00435 0.84 +0.4 91,634 - ABZR87_RS00435 0.84 +1.5 91,634 - ABZR87_RS00435 0.84 +2.0 91,925 + +3.0 91,926 - +2.5 91,926 - +1.0 92,054 + ABZR87_RS00440 0.17 +2.1 92,054 + ABZR87_RS00440 0.17 +2.0 92,054 + ABZR87_RS00440 0.17 +2.4 92,055 - ABZR87_RS00440 0.18 -0.4 92,091 + ABZR87_RS00440 0.29 +1.6 92,091 + ABZR87_RS00440 0.29 +2.1 92,091 + ABZR87_RS00440 0.29 +1.4 92,091 + ABZR87_RS00440 0.29 +1.8 92,091 + ABZR87_RS00440 0.29 +1.6 92,091 + ABZR87_RS00440 0.29 +2.1 92,091 + ABZR87_RS00440 0.29 +2.0 92,091 + ABZR87_RS00440 0.29 +1.6 92,091 + ABZR87_RS00440 0.29 +2.0 92,091 + ABZR87_RS00440 0.29 +1.6 92,091 + ABZR87_RS00440 0.29 +1.5 92,091 + ABZR87_RS00440 0.29 +2.4 92,092 - ABZR87_RS00440 0.29 -0.2 92,092 - ABZR87_RS00440 0.29 -0.6 92,092 - ABZR87_RS00440 0.29 +1.8 92,092 - ABZR87_RS00440 0.29 -0.4 92,092 - ABZR87_RS00440 0.29 -0.5 92,092 - ABZR87_RS00440 0.29 +1.0 92,092 - ABZR87_RS00440 0.29 -0.9 92,092 - ABZR87_RS00440 0.29 -0.3 92,092 - ABZR87_RS00440 0.29 +0.4 92,092 - ABZR87_RS00440 0.29 -0.4 92,092 - ABZR87_RS00440 0.29 -1.1 92,092 - ABZR87_RS00440 0.29 +0.0 92,095 + ABZR87_RS00440 0.30 +2.9 92,095 + ABZR87_RS00440 0.30 +1.4 92,095 + ABZR87_RS00440 0.30 +2.9 92,095 + ABZR87_RS00440 0.30 +2.9 92,096 - ABZR87_RS00440 0.30 -0.8 92,096 - ABZR87_RS00440 0.30 +0.0 92,110 + ABZR87_RS00440 0.35 +3.2 92,111 - ABZR87_RS00440 0.35 +0.2 92,169 + ABZR87_RS00440 0.53 +2.8 92,169 + ABZR87_RS00440 0.53 +2.5 92,169 + ABZR87_RS00440 0.53 +2.0 92,169 + ABZR87_RS00440 0.53 +3.1 92,169 + ABZR87_RS00440 0.53 +2.4 92,170 - ABZR87_RS00440 0.53 -1.3 92,208 + ABZR87_RS00440 0.65 +3.6 92,208 + ABZR87_RS00440 0.65 +3.3 92,208 + ABZR87_RS00440 0.65 +2.3 92,208 + ABZR87_RS00440 0.65 +2.4 92,208 + ABZR87_RS00440 0.65 +1.8 92,208 + ABZR87_RS00440 0.65 +3.1 92,208 + ABZR87_RS00440 0.65 +2.2 92,208 + ABZR87_RS00440 0.65 +2.2 92,209 - ABZR87_RS00440 0.65 -0.4 92,209 - ABZR87_RS00440 0.65 -0.1 92,235 + ABZR87_RS00440 0.73 +1.8 92,235 + ABZR87_RS00440 0.73 +3.4 92,235 + ABZR87_RS00440 0.73 +3.1 92,235 + ABZR87_RS00440 0.73 +2.2 92,235 + ABZR87_RS00440 0.73 +2.2 92,236 - ABZR87_RS00440 0.73 -0.7 92,236 - ABZR87_RS00440 0.73 -1.7 92,236 - ABZR87_RS00440 0.73 +0.8 92,329 + +2.9 92,329 + +2.9 92,330 - +0.2 92,330 - -0.5 92,334 + +2.0 92,335 - -0.6 92,335 - +0.3 92,369 - +0.3 92,369 - -0.5 92,369 - -0.6 92,387 + +1.1 92,387 + +1.0 92,387 + +2.0 92,387 + +1.7 92,387 + +0.7 92,387 + +1.1 92,388 - -0.8 92,388 - -0.9 92,388 - +0.2 92,388 - -1.2 92,388 - -1.1 92,445 - -0.2 92,445 - -0.3 92,445 - -0.4 92,507 + +0.5 92,507 + +1.4 92,540 + +1.8 92,580 + +1.2 92,580 + +1.8 92,580 + +1.2 92,580 + +0.9 92,580 + +0.8 92,580 + +2.1 92,580 + +1.6 92,580 + +2.0 92,581 - -0.6 92,581 - -1.6 92,581 - -0.3 92,581 - -0.2 92,581 - -0.6 92,581 - +1.0 92,581 - -0.5 92,581 - +0.5 92,581 - -0.4 92,581 - -0.2 92,581 - -0.4 92,581 - +0.4 92,581 - -0.3 92,581 - -0.6 92,581 - -0.1 92,581 - -1.0 92,581 - -0.6 92,581 - +0.6 92,640 - -1.1 92,858 + +0.4 92,859 - -0.4 92,859 - -1.0 92,859 - -0.6 92,884 + +0.2 92,885 - +0.4 92,927 - ABZR87_RS00445 0.13 -0.3 93,082 + ABZR87_RS00445 0.89 +1.3 93,082 + ABZR87_RS00445 0.89 +0.4 93,083 - -0.0 93,247 + -1.0 93,247 + +1.1 93,247 + +0.4 93,248 - +0.1 93,248 - -0.1 93,257 + +0.3 93,257 + -1.4 93,258 - -0.4 93,258 - +0.2 93,258 - +0.5
Or see this region's nucleotide sequence