Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00365 and ABZR87_RS00370 are separated by 25 nucleotides ABZR87_RS00370 and ABZR87_RS00375 overlap by 4 nucleotides
ABZR87_RS00365: ABZR87_RS00365 - mechanosensitive ion channel domain-containing protein, at 74,125 to 75,501
_RS00365
ABZR87_RS00370: ABZR87_RS00370 - phospholipase D family protein, at 75,527 to 76,096
_RS00370
ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487
_RS00375
Position (kb) 75
76
77 Strain fitness (log2 ratio) -2
-1
0
1
2 at 74.559 kb on + strand, within ABZR87_RS00365 at 74.560 kb on - strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.621 kb on + strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.622 kb on - strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.690 kb on + strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 74.691 kb on - strand, within ABZR87_RS00365 at 75.011 kb on + strand, within ABZR87_RS00365 at 75.012 kb on - strand, within ABZR87_RS00365 at 75.012 kb on - strand, within ABZR87_RS00365 at 75.044 kb on + strand, within ABZR87_RS00365 at 75.044 kb on + strand, within ABZR87_RS00365 at 75.044 kb on + strand, within ABZR87_RS00365 at 75.045 kb on - strand, within ABZR87_RS00365 at 75.045 kb on - strand, within ABZR87_RS00365 at 75.045 kb on - strand, within ABZR87_RS00365 at 75.045 kb on - strand, within ABZR87_RS00365 at 75.045 kb on - strand, within ABZR87_RS00365 at 75.146 kb on + strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.159 kb on - strand, within ABZR87_RS00365 at 75.159 kb on - strand, within ABZR87_RS00365 at 75.233 kb on + strand, within ABZR87_RS00365 at 75.233 kb on + strand, within ABZR87_RS00365 at 75.234 kb on - strand, within ABZR87_RS00365 at 75.234 kb on - strand, within ABZR87_RS00365 at 75.501 kb on + strand at 75.501 kb on + strand at 75.502 kb on - strand at 75.502 kb on - strand at 75.529 kb on - strand at 75.582 kb on + strand at 75.583 kb on - strand at 75.583 kb on - strand at 75.620 kb on + strand, within ABZR87_RS00370 at 75.620 kb on + strand, within ABZR87_RS00370 at 75.620 kb on + strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.735 kb on + strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.874 kb on + strand, within ABZR87_RS00370 at 75.875 kb on - strand, within ABZR87_RS00370 at 75.897 kb on + strand, within ABZR87_RS00370 at 75.897 kb on + strand, within ABZR87_RS00370 at 75.898 kb on - strand, within ABZR87_RS00370 at 75.898 kb on - strand, within ABZR87_RS00370 at 76.151 kb on + strand at 76.151 kb on + strand at 76.163 kb on + strand at 76.164 kb on - strand at 76.298 kb on + strand, within ABZR87_RS00375 at 76.299 kb on - strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.603 kb on - strand, within ABZR87_RS00375
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 74,559 + ABZR87_RS00365 0.32 -0.0 74,560 - ABZR87_RS00365 0.32 -1.6 74,621 + ABZR87_RS00365 0.36 -0.1 74,621 + ABZR87_RS00365 0.36 +0.3 74,621 + ABZR87_RS00365 0.36 +0.4 74,621 + ABZR87_RS00365 0.36 -0.3 74,622 - ABZR87_RS00365 0.36 +0.4 74,622 - ABZR87_RS00365 0.36 -1.2 74,622 - ABZR87_RS00365 0.36 -0.8 74,622 - ABZR87_RS00365 0.36 -0.0 74,622 - ABZR87_RS00365 0.36 +2.2 74,690 + ABZR87_RS00365 0.41 +0.3 74,690 + ABZR87_RS00365 0.41 -0.9 74,690 + ABZR87_RS00365 0.41 +1.5 74,690 + ABZR87_RS00365 0.41 -0.4 74,691 - ABZR87_RS00365 0.41 +0.0 74,691 - ABZR87_RS00365 0.41 +0.3 74,691 - ABZR87_RS00365 0.41 -0.9 74,691 - ABZR87_RS00365 0.41 +0.1 75,011 + ABZR87_RS00365 0.64 -1.0 75,012 - ABZR87_RS00365 0.64 +0.2 75,012 - ABZR87_RS00365 0.64 -0.1 75,044 + ABZR87_RS00365 0.67 +0.3 75,044 + ABZR87_RS00365 0.67 -0.1 75,044 + ABZR87_RS00365 0.67 -0.8 75,045 - ABZR87_RS00365 0.67 +0.2 75,045 - ABZR87_RS00365 0.67 -1.7 75,045 - ABZR87_RS00365 0.67 -0.5 75,045 - ABZR87_RS00365 0.67 -1.8 75,045 - ABZR87_RS00365 0.67 -1.7 75,146 + ABZR87_RS00365 0.74 -1.9 75,147 - ABZR87_RS00365 0.74 +0.6 75,147 - ABZR87_RS00365 0.74 -0.3 75,147 - ABZR87_RS00365 0.74 +0.2 75,158 + ABZR87_RS00365 0.75 +0.5 75,158 + ABZR87_RS00365 0.75 -1.8 75,158 + ABZR87_RS00365 0.75 -0.6 75,158 + ABZR87_RS00365 0.75 +0.5 75,159 - ABZR87_RS00365 0.75 -0.7 75,159 - ABZR87_RS00365 0.75 +1.6 75,233 + ABZR87_RS00365 0.80 -1.3 75,233 + ABZR87_RS00365 0.80 -0.6 75,234 - ABZR87_RS00365 0.81 +0.2 75,234 - ABZR87_RS00365 0.81 -0.3 75,501 + -0.7 75,501 + -1.3 75,502 - -0.7 75,502 - -0.1 75,529 - +1.3 75,582 + -0.7 75,583 - +0.0 75,583 - -0.4 75,620 + ABZR87_RS00370 0.16 -0.6 75,620 + ABZR87_RS00370 0.16 -0.3 75,620 + ABZR87_RS00370 0.16 -0.9 75,621 - ABZR87_RS00370 0.16 -0.6 75,621 - ABZR87_RS00370 0.16 -0.3 75,621 - ABZR87_RS00370 0.16 +0.9 75,735 + ABZR87_RS00370 0.36 -0.9 75,736 - ABZR87_RS00370 0.37 -0.8 75,736 - ABZR87_RS00370 0.37 -0.2 75,736 - ABZR87_RS00370 0.37 -0.2 75,874 + ABZR87_RS00370 0.61 -1.8 75,875 - ABZR87_RS00370 0.61 +0.2 75,897 + ABZR87_RS00370 0.65 +2.0 75,897 + ABZR87_RS00370 0.65 -0.5 75,898 - ABZR87_RS00370 0.65 +0.0 75,898 - ABZR87_RS00370 0.65 -0.5 76,151 + -2.1 76,151 + -0.1 76,163 + +0.2 76,164 - -1.9 76,298 + ABZR87_RS00375 0.15 +0.1 76,299 - ABZR87_RS00375 0.15 -0.4 76,598 + ABZR87_RS00375 0.36 -0.4 76,598 + ABZR87_RS00375 0.36 -0.8 76,598 + ABZR87_RS00375 0.36 -0.7 76,599 - ABZR87_RS00375 0.36 -0.9 76,599 - ABZR87_RS00375 0.36 -1.2 76,599 - ABZR87_RS00375 0.36 -1.0 76,599 - ABZR87_RS00375 0.36 -2.0 76,599 - ABZR87_RS00375 0.36 -0.1 76,599 - ABZR87_RS00375 0.36 -0.2 76,603 - ABZR87_RS00375 0.37 -1.3
Or see this region's nucleotide sequence