Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00280

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00275 and ABZR87_RS00280 are separated by 79 nucleotidesABZR87_RS00280 and ABZR87_RS00285 are separated by 271 nucleotides ABZR87_RS00275: ABZR87_RS00275 - NAD-dependent epimerase/dehydratase family protein, at 55,994 to 56,995 _RS00275 ABZR87_RS00280: ABZR87_RS00280 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 57,075 to 58,124 _RS00280 ABZR87_RS00285: ABZR87_RS00285 - acetylornithine transaminase, at 58,396 to 59,583 _RS00285 Position (kb) 57 58 59Strain fitness (log2 ratio) -1 0 1 2at 56.193 kb on + strand, within ABZR87_RS00275at 56.310 kb on + strand, within ABZR87_RS00275at 56.310 kb on + strand, within ABZR87_RS00275at 56.311 kb on - strand, within ABZR87_RS00275at 56.311 kb on - strand, within ABZR87_RS00275at 56.311 kb on - strand, within ABZR87_RS00275at 56.382 kb on + strand, within ABZR87_RS00275at 56.382 kb on + strand, within ABZR87_RS00275at 56.382 kb on + strand, within ABZR87_RS00275at 56.383 kb on - strand, within ABZR87_RS00275at 56.383 kb on - strand, within ABZR87_RS00275at 56.383 kb on - strand, within ABZR87_RS00275at 56.383 kb on - strand, within ABZR87_RS00275at 56.510 kb on + strand, within ABZR87_RS00275at 56.535 kb on + strand, within ABZR87_RS00275at 56.535 kb on + strand, within ABZR87_RS00275at 56.535 kb on + strand, within ABZR87_RS00275at 56.535 kb on + strand, within ABZR87_RS00275at 56.536 kb on - strand, within ABZR87_RS00275at 56.536 kb on - strand, within ABZR87_RS00275at 56.556 kb on + strand, within ABZR87_RS00275at 56.556 kb on + strand, within ABZR87_RS00275at 56.556 kb on + strand, within ABZR87_RS00275at 56.557 kb on - strand, within ABZR87_RS00275at 56.680 kb on + strand, within ABZR87_RS00275at 56.681 kb on - strand, within ABZR87_RS00275at 56.681 kb on - strand, within ABZR87_RS00275at 56.681 kb on - strand, within ABZR87_RS00275at 56.681 kb on - strand, within ABZR87_RS00275at 57.061 kb on + strandat 57.062 kb on - strandat 57.062 kb on - strandat 57.072 kb on + strandat 57.072 kb on + strandat 57.072 kb on + strandat 57.072 kb on + strandat 57.072 kb on + strandat 57.072 kb on + strandat 57.072 kb on + strandat 57.072 kb on + strandat 57.073 kb on - strandat 57.073 kb on - strandat 57.073 kb on - strandat 57.073 kb on - strandat 57.073 kb on - strandat 57.081 kb on + strandat 57.081 kb on + strandat 57.178 kb on - strandat 57.462 kb on - strand, within ABZR87_RS00280at 57.462 kb on - strand, within ABZR87_RS00280at 57.462 kb on - strand, within ABZR87_RS00280at 57.462 kb on - strand, within ABZR87_RS00280at 57.483 kb on + strand, within ABZR87_RS00280at 57.483 kb on + strand, within ABZR87_RS00280at 57.484 kb on - strand, within ABZR87_RS00280at 57.522 kb on + strand, within ABZR87_RS00280at 57.522 kb on + strand, within ABZR87_RS00280at 57.522 kb on + strand, within ABZR87_RS00280at 57.523 kb on - strand, within ABZR87_RS00280at 57.523 kb on - strand, within ABZR87_RS00280at 57.596 kb on + strand, within ABZR87_RS00280at 57.603 kb on + strand, within ABZR87_RS00280at 57.603 kb on + strand, within ABZR87_RS00280at 57.604 kb on - strand, within ABZR87_RS00280at 57.804 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.834 kb on + strand, within ABZR87_RS00280at 57.835 kb on - strand, within ABZR87_RS00280at 57.835 kb on - strand, within ABZR87_RS00280at 57.835 kb on - strand, within ABZR87_RS00280at 57.835 kb on - strand, within ABZR87_RS00280at 57.835 kb on - strand, within ABZR87_RS00280at 57.835 kb on - strand, within ABZR87_RS00280at 57.886 kb on - strand, within ABZR87_RS00280at 57.886 kb on - strand, within ABZR87_RS00280at 57.886 kb on - strand, within ABZR87_RS00280at 57.970 kb on - strand, within ABZR87_RS00280at 57.997 kb on - strand, within ABZR87_RS00280at 58.184 kb on - strandat 58.184 kb on - strandat 58.184 kb on - strandat 58.196 kb on + strandat 58.197 kb on - strandat 58.197 kb on - strandat 58.274 kb on + strandat 58.412 kb on - strandat 58.432 kb on + strandat 58.432 kb on + strandat 58.432 kb on + strandat 58.432 kb on + strandat 58.432 kb on + strandat 58.432 kb on + strandat 58.433 kb on - strandat 58.433 kb on - strandat 58.433 kb on - strandat 58.433 kb on - strandat 58.433 kb on - strandat 58.756 kb on - strand, within ABZR87_RS00285at 58.756 kb on - strand, within ABZR87_RS00285at 58.756 kb on - strand, within ABZR87_RS00285

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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56,193 + ABZR87_RS00275 0.20 -0.2
56,310 + ABZR87_RS00275 0.32 -0.0
56,310 + ABZR87_RS00275 0.32 +0.2
56,311 - ABZR87_RS00275 0.32 -0.7
56,311 - ABZR87_RS00275 0.32 -1.0
56,311 - ABZR87_RS00275 0.32 +0.0
56,382 + ABZR87_RS00275 0.39 +0.8
56,382 + ABZR87_RS00275 0.39 +0.7
56,382 + ABZR87_RS00275 0.39 +1.6
56,383 - ABZR87_RS00275 0.39 +0.1
56,383 - ABZR87_RS00275 0.39 +0.5
56,383 - ABZR87_RS00275 0.39 +0.4
56,383 - ABZR87_RS00275 0.39 -0.5
56,510 + ABZR87_RS00275 0.51 -0.6
56,535 + ABZR87_RS00275 0.54 +1.2
56,535 + ABZR87_RS00275 0.54 +0.0
56,535 + ABZR87_RS00275 0.54 +0.5
56,535 + ABZR87_RS00275 0.54 -0.3
56,536 - ABZR87_RS00275 0.54 +0.4
56,536 - ABZR87_RS00275 0.54 +0.8
56,556 + ABZR87_RS00275 0.56 +0.3
56,556 + ABZR87_RS00275 0.56 -0.5
56,556 + ABZR87_RS00275 0.56 +0.4
56,557 - ABZR87_RS00275 0.56 -0.1
56,680 + ABZR87_RS00275 0.68 +0.4
56,681 - ABZR87_RS00275 0.69 +1.0
56,681 - ABZR87_RS00275 0.69 +0.9
56,681 - ABZR87_RS00275 0.69 +2.0
56,681 - ABZR87_RS00275 0.69 -0.2
57,061 + -0.3
57,062 - +0.8
57,062 - -0.2
57,072 + -0.1
57,072 + +0.6
57,072 + +0.6
57,072 + +0.2
57,072 + +0.2
57,072 + +0.5
57,072 + +0.8
57,072 + +0.6
57,073 - +2.3
57,073 - +2.2
57,073 - +1.0
57,073 - +2.0
57,073 - +1.3
57,081 + +0.6
57,081 + +0.5
57,178 - +1.4
57,462 - ABZR87_RS00280 0.37 +0.7
57,462 - ABZR87_RS00280 0.37 +1.4
57,462 - ABZR87_RS00280 0.37 +1.9
57,462 - ABZR87_RS00280 0.37 +1.9
57,483 + ABZR87_RS00280 0.39 -0.1
57,483 + ABZR87_RS00280 0.39 +1.0
57,484 - ABZR87_RS00280 0.39 +2.2
57,522 + ABZR87_RS00280 0.43 +0.3
57,522 + ABZR87_RS00280 0.43 +2.5
57,522 + ABZR87_RS00280 0.43 +0.6
57,523 - ABZR87_RS00280 0.43 +1.2
57,523 - ABZR87_RS00280 0.43 +1.8
57,596 + ABZR87_RS00280 0.50 +0.2
57,603 + ABZR87_RS00280 0.50 +0.8
57,603 + ABZR87_RS00280 0.50 -0.4
57,604 - ABZR87_RS00280 0.50 -0.3
57,804 + ABZR87_RS00280 0.69 +0.4
57,834 + ABZR87_RS00280 0.72 +0.9
57,834 + ABZR87_RS00280 0.72 +0.0
57,834 + ABZR87_RS00280 0.72 -0.1
57,834 + ABZR87_RS00280 0.72 -0.4
57,834 + ABZR87_RS00280 0.72 +0.2
57,834 + ABZR87_RS00280 0.72 +0.1
57,834 + ABZR87_RS00280 0.72 +0.1
57,834 + ABZR87_RS00280 0.72 +0.8
57,834 + ABZR87_RS00280 0.72 -0.8
57,834 + ABZR87_RS00280 0.72 +0.7
57,834 + ABZR87_RS00280 0.72 +0.9
57,835 - ABZR87_RS00280 0.72 +1.7
57,835 - ABZR87_RS00280 0.72 -0.3
57,835 - ABZR87_RS00280 0.72 +1.6
57,835 - ABZR87_RS00280 0.72 -0.5
57,835 - ABZR87_RS00280 0.72 +0.0
57,835 - ABZR87_RS00280 0.72 +0.8
57,886 - ABZR87_RS00280 0.77 +0.3
57,886 - ABZR87_RS00280 0.77 +0.6
57,886 - ABZR87_RS00280 0.77 +1.3
57,970 - ABZR87_RS00280 0.85 +1.6
57,997 - ABZR87_RS00280 0.88 +0.8
58,184 - +1.1
58,184 - -0.5
58,184 - -0.7
58,196 + +0.1
58,197 - -0.5
58,197 - -1.1
58,274 + +0.5
58,412 - -1.0
58,432 + -1.1
58,432 + +0.0
58,432 + +0.0
58,432 + -1.5
58,432 + +0.6
58,432 + -0.1
58,433 - +0.5
58,433 - +1.0
58,433 - -0.3
58,433 - +0.5
58,433 - -1.3
58,756 - ABZR87_RS00285 0.30 +1.3
58,756 - ABZR87_RS00285 0.30 -0.3
58,756 - ABZR87_RS00285 0.30 +1.0

Or see this region's nucleotide sequence