Experiment: MoLS4 with Pantothenic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2218 and DVU2220 are separated by 374 nucleotides DVU2220 and DVU2221 are separated by 45 nucleotides DVU2221 and ssb are separated by 4 nucleotides ssb and DVU2223 are separated by 39 nucleotides
DVU2218: DVU2218 - GTP-binding protein, putative (TIGR), at 2,313,101 to 2,314,147
DVU2218
DVU2220: DVU2220 - conserved hypothetical protein (TIGR), at 2,314,522 to 2,314,791
DVU2220
DVU2221: DVU2221 - hypothetical protein (TIGR), at 2,314,837 to 2,314,977
DVU2221
DVU2222: ssb - single-strand binding protein (TIGR), at 2,314,982 to 2,315,512
ssb
DVU2223: DVU2223 - hypothetical protein (TIGR), at 2,315,552 to 2,315,896
DVU2223
Position (kb)
2314
2315 Strain fitness (log2 ratio)
-1
0
1 at 2313.536 kb on - strand, within DVU2218 at 2313.600 kb on + strand, within DVU2218 at 2313.650 kb on + strand, within DVU2218 at 2313.650 kb on + strand, within DVU2218 at 2313.650 kb on + strand, within DVU2218 at 2313.658 kb on - strand, within DVU2218 at 2313.728 kb on - strand, within DVU2218 at 2313.742 kb on + strand, within DVU2218 at 2313.765 kb on - strand, within DVU2218 at 2313.794 kb on - strand, within DVU2218 at 2313.844 kb on + strand, within DVU2218 at 2313.879 kb on - strand, within DVU2218 at 2313.899 kb on + strand, within DVU2218 at 2314.016 kb on - strand, within DVU2218 at 2314.059 kb on + strand at 2314.159 kb on - strand at 2314.207 kb on + strand at 2314.334 kb on + strand at 2314.342 kb on - strand at 2314.451 kb on - strand at 2314.650 kb on - strand, within DVU2220 at 2314.906 kb on - strand, within DVU2221 at 2314.980 kb on + strand at 2315.638 kb on + strand, within DVU2223 at 2315.720 kb on - strand, within DVU2223
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Pantothenic remove 2,313,536 - DVU2218 0.42 -0.2 2,313,600 + DVU2218 0.48 +0.9 2,313,650 + DVU2218 0.52 -0.3 2,313,650 + DVU2218 0.52 -0.9 2,313,650 + DVU2218 0.52 -0.4 2,313,658 - DVU2218 0.53 -0.1 2,313,728 - DVU2218 0.60 -1.6 2,313,742 + DVU2218 0.61 +0.1 2,313,765 - DVU2218 0.63 -0.1 2,313,794 - DVU2218 0.66 +0.1 2,313,844 + DVU2218 0.71 -1.1 2,313,879 - DVU2218 0.74 -0.7 2,313,899 + DVU2218 0.76 +0.1 2,314,016 - DVU2218 0.87 -0.7 2,314,059 + +0.4 2,314,159 - +0.4 2,314,207 + -0.4 2,314,334 + -0.7 2,314,342 - -0.1 2,314,451 - -0.5 2,314,650 - DVU2220 0.47 -1.0 2,314,906 - DVU2221 0.49 -0.6 2,314,980 + -1.0 2,315,638 + DVU2223 0.25 +0.0 2,315,720 - DVU2223 0.49 +0.1
Or see this region's nucleotide sequence