Experiment: LB; anaerobic; flight
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt amt and glnB-1 are separated by 34 nucleotides glnB-1 and SO0762 are separated by 308 nucleotides SO0762 and SO0763 are separated by 376 nucleotides SO0763 and SO0764 overlap by 14 nucleotides
SO0760: amt - ammonium transporter (NCBI ptt file), at 775,008 to 776,234
amt
SO0761: glnB-1 - nitrogen regulatory protein P-II 1 (NCBI ptt file), at 776,269 to 776,607
glnB-1
SO0762: SO0762 - isochorismatase family protein (NCBI ptt file), at 776,916 to 777,458
SO0762
SO0763: SO0763 - hypothetical protein (NCBI ptt file), at 777,835 to 778,056
SO0763
SO0764: SO0764 - hypothetical protein (NCBI ptt file), at 778,043 to 778,852
SO0764
Position (kb) 776
777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.019 kb on - strand, within amt at 776.124 kb on + strand at 776.124 kb on + strand at 776.124 kb on + strand at 776.158 kb on + strand at 776.214 kb on + strand at 776.275 kb on - strand at 776.282 kb on + strand at 776.290 kb on - strand at 776.316 kb on + strand, within glnB-1 at 776.380 kb on - strand, within glnB-1 at 776.462 kb on + strand, within glnB-1 at 776.483 kb on - strand, within glnB-1 at 776.504 kb on + strand, within glnB-1 at 776.527 kb on + strand, within glnB-1 at 776.599 kb on - strand at 776.614 kb on - strand at 776.788 kb on - strand at 776.915 kb on - strand at 776.940 kb on - strand at 776.984 kb on - strand, within SO0762 at 777.028 kb on - strand, within SO0762 at 777.030 kb on + strand, within SO0762 at 777.053 kb on + strand, within SO0762 at 777.063 kb on + strand, within SO0762 at 777.156 kb on + strand, within SO0762 at 777.174 kb on - strand, within SO0762 at 777.319 kb on + strand, within SO0762 at 777.369 kb on + strand, within SO0762 at 777.384 kb on - strand, within SO0762 at 777.408 kb on + strand at 777.468 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.497 kb on + strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.505 kb on - strand at 777.517 kb on - strand at 777.533 kb on - strand at 777.540 kb on + strand at 777.556 kb on + strand at 777.556 kb on + strand at 777.556 kb on + strand at 777.617 kb on - strand at 777.619 kb on - strand at 777.667 kb on - strand at 777.927 kb on - strand, within SO0763 at 777.927 kb on - strand, within SO0763 at 777.963 kb on + strand, within SO0763 at 777.963 kb on + strand, within SO0763 at 777.963 kb on + strand, within SO0763 at 777.971 kb on - strand, within SO0763 at 777.971 kb on - strand, within SO0763 at 777.971 kb on - strand, within SO0763 at 777.983 kb on - strand, within SO0763 at 778.021 kb on + strand, within SO0763 at 778.022 kb on + strand, within SO0763 at 778.030 kb on - strand, within SO0763 at 778.030 kb on - strand, within SO0763 at 778.050 kb on + strand at 778.058 kb on - strand at 778.106 kb on + strand at 778.120 kb on + strand at 778.140 kb on - strand, within SO0764 at 778.158 kb on - strand, within SO0764 at 778.233 kb on + strand, within SO0764 at 778.268 kb on - strand, within SO0764 at 778.275 kb on + strand, within SO0764 at 778.342 kb on + strand, within SO0764 at 778.342 kb on + strand, within SO0764 at 778.350 kb on - strand, within SO0764 at 778.423 kb on + strand, within SO0764 at 778.423 kb on + strand, within SO0764
Per-strain Table
Position Strand Gene LocusTag Fraction LB; anaerobic; flight remove 776,019 - amt SO0760 0.82 +0.3 776,124 + -0.7 776,124 + -0.9 776,124 + +2.1 776,158 + +1.0 776,214 + +1.5 776,275 - -0.2 776,282 + -0.5 776,290 - -0.5 776,316 + glnB-1 SO0761 0.14 -2.1 776,380 - glnB-1 SO0761 0.33 +0.4 776,462 + glnB-1 SO0761 0.57 -0.9 776,483 - glnB-1 SO0761 0.63 +0.7 776,504 + glnB-1 SO0761 0.69 +0.4 776,527 + glnB-1 SO0761 0.76 +0.2 776,599 - +1.3 776,614 - -0.8 776,788 - +0.8 776,915 - -0.2 776,940 - +0.3 776,984 - SO0762 0.13 +0.5 777,028 - SO0762 0.21 +1.3 777,030 + SO0762 0.21 +2.7 777,053 + SO0762 0.25 -0.4 777,063 + SO0762 0.27 +1.1 777,156 + SO0762 0.44 +1.1 777,174 - SO0762 0.48 -0.7 777,319 + SO0762 0.74 +2.0 777,369 + SO0762 0.83 +0.7 777,384 - SO0762 0.86 -0.1 777,408 + +0.2 777,468 + +0.2 777,497 + -1.6 777,497 + +0.2 777,497 + -0.7 777,497 + -2.8 777,505 - +0.1 777,505 - -2.7 777,505 - +0.2 777,505 - -1.3 777,517 - +0.6 777,533 - +0.1 777,540 + -2.7 777,556 + -0.1 777,556 + -2.2 777,556 + +0.1 777,617 - -0.1 777,619 - +0.8 777,667 - -1.3 777,927 - SO0763 0.41 +0.7 777,927 - SO0763 0.41 +0.5 777,963 + SO0763 0.58 +0.6 777,963 + SO0763 0.58 -0.2 777,963 + SO0763 0.58 +0.6 777,971 - SO0763 0.61 -2.7 777,971 - SO0763 0.61 +1.2 777,971 - SO0763 0.61 +1.2 777,983 - SO0763 0.67 -0.0 778,021 + SO0763 0.84 -0.1 778,022 + SO0763 0.84 -1.1 778,030 - SO0763 0.88 -0.1 778,030 - SO0763 0.88 -1.5 778,050 + -2.7 778,058 - -0.6 778,106 + -0.2 778,120 + -0.6 778,140 - SO0764 0.12 -2.5 778,158 - SO0764 0.14 -1.6 778,233 + SO0764 0.23 +1.8 778,268 - SO0764 0.28 +0.7 778,275 + SO0764 0.29 +2.2 778,342 + SO0764 0.37 -1.3 778,342 + SO0764 0.37 +1.0 778,350 - SO0764 0.38 +0.7 778,423 + SO0764 0.47 +0.7 778,423 + SO0764 0.47 +0.2
Or see this region's nucleotide sequence