Strain Fitness in Shewanella oneidensis MR-1 around SO0282

Experiment: LB; anaerobic; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0281 and SO0282 overlap by 13 nucleotidesSO0282 and SO0283 overlap by 4 nucleotidesSO0283 and SO0284 overlap by 1 nucleotides SO0281: SO0281 - type IV pilus biogenesis protein PilM (NCBI ptt file), at 288,762 to 289,841 SO0281 SO0282: SO0282 - type IV pilus biogenesis protein PilN (NCBI ptt file), at 289,829 to 290,413 SO0282 SO0283: SO0283 - type IV pilus biogenesis protein PilO (NCBI ptt file), at 290,410 to 291,030 SO0283 SO0284: SO0284 - type IV pilus biogenesis protein PilP (NCBI ptt file), at 291,030 to 291,545 SO0284 Position (kb) 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 288.845 kb on + strandat 288.845 kb on + strandat 288.845 kb on + strandat 288.952 kb on + strand, within SO0281at 288.960 kb on - strand, within SO0281at 289.042 kb on - strand, within SO0281at 289.103 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.203 kb on - strand, within SO0281at 289.223 kb on - strand, within SO0281at 289.272 kb on + strand, within SO0281at 289.279 kb on + strand, within SO0281at 289.280 kb on - strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.311 kb on - strand, within SO0281at 289.332 kb on + strand, within SO0281at 289.338 kb on - strand, within SO0281at 289.392 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.422 kb on + strand, within SO0281at 289.428 kb on + strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.454 kb on + strand, within SO0281at 289.550 kb on - strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.662 kb on + strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.731 kb on + strand, within SO0281at 289.733 kb on + strand, within SO0281at 289.733 kb on - strand, within SO0281at 289.749 kb on - strandat 289.787 kb on + strandat 289.791 kb on - strandat 289.797 kb on + strandat 289.804 kb on + strandat 289.805 kb on - strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.812 kb on - strandat 289.812 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.832 kb on - strandat 289.836 kb on + strandat 289.836 kb on + strandat 289.837 kb on + strandat 289.864 kb on + strandat 289.884 kb on - strandat 289.928 kb on - strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.941 kb on - strand, within SO0282at 289.946 kb on - strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.135 kb on + strand, within SO0282at 290.156 kb on - strand, within SO0282at 290.163 kb on + strand, within SO0282at 290.167 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.238 kb on + strand, within SO0282at 290.238 kb on - strand, within SO0282at 290.250 kb on + strand, within SO0282at 290.256 kb on + strand, within SO0282at 290.258 kb on + strand, within SO0282at 290.258 kb on - strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.273 kb on - strand, within SO0282at 290.275 kb on - strand, within SO0282at 290.282 kb on + strand, within SO0282at 290.282 kb on - strand, within SO0282at 290.291 kb on + strand, within SO0282at 290.303 kb on - strand, within SO0282at 290.318 kb on + strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.355 kb on + strandat 290.378 kb on - strandat 290.378 kb on - strandat 290.420 kb on + strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.474 kb on - strand, within SO0283at 290.533 kb on + strand, within SO0283at 290.536 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.577 kb on - strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.584 kb on - strand, within SO0283at 290.597 kb on - strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.637 kb on + strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.639 kb on - strand, within SO0283at 290.642 kb on + strand, within SO0283at 290.650 kb on + strand, within SO0283at 290.731 kb on + strand, within SO0283at 290.733 kb on - strand, within SO0283at 290.760 kb on - strand, within SO0283at 290.766 kb on + strand, within SO0283at 290.766 kb on - strand, within SO0283at 290.825 kb on - strand, within SO0283at 290.846 kb on + strand, within SO0283at 290.860 kb on + strand, within SO0283at 290.861 kb on + strand, within SO0283at 290.868 kb on + strand, within SO0283at 290.869 kb on - strand, within SO0283at 290.876 kb on - strand, within SO0283at 290.894 kb on + strand, within SO0283at 290.932 kb on - strand, within SO0283at 290.958 kb on - strand, within SO0283at 290.967 kb on + strand, within SO0283at 290.967 kb on + strand, within SO0283at 290.975 kb on - strandat 290.975 kb on - strandat 290.975 kb on - strandat 290.975 kb on - strandat 290.987 kb on + strandat 290.987 kb on + strandat 290.995 kb on - strandat 290.995 kb on - strandat 290.995 kb on - strandat 291.000 kb on - strandat 291.037 kb on + strandat 291.043 kb on - strandat 291.043 kb on - strandat 291.059 kb on - strandat 291.093 kb on + strand, within SO0284at 291.094 kb on + strand, within SO0284at 291.099 kb on - strand, within SO0284at 291.101 kb on - strand, within SO0284at 291.117 kb on + strand, within SO0284at 291.135 kb on + strand, within SO0284at 291.135 kb on + strand, within SO0284at 291.137 kb on - strand, within SO0284at 291.148 kb on + strand, within SO0284at 291.161 kb on + strand, within SO0284at 291.173 kb on + strand, within SO0284at 291.192 kb on + strand, within SO0284at 291.196 kb on - strand, within SO0284at 291.205 kb on + strand, within SO0284at 291.205 kb on + strand, within SO0284at 291.213 kb on - strand, within SO0284at 291.263 kb on - strand, within SO0284at 291.263 kb on - strand, within SO0284at 291.354 kb on + strand, within SO0284at 291.362 kb on - strand, within SO0284at 291.362 kb on - strand, within SO0284at 291.389 kb on - strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.408 kb on - strand, within SO0284at 291.408 kb on - strand, within SO0284at 291.413 kb on - strand, within SO0284at 291.413 kb on - strand, within SO0284

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Per-strain Table

Position Strand Gene LocusTag Fraction LB; anaerobic; flight
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288,845 + +2.6
288,845 + -0.8
288,845 + -0.2
288,952 + SO0281 0.18 -1.4
288,960 - SO0281 0.18 +0.9
289,042 - SO0281 0.26 +0.0
289,103 + SO0281 0.32 -2.0
289,190 + SO0281 0.40 -1.1
289,190 + SO0281 0.40 +0.5
289,193 - SO0281 0.40 +1.7
289,193 - SO0281 0.40 -0.2
289,198 - SO0281 0.40 -2.1
289,198 - SO0281 0.40 -2.1
289,198 - SO0281 0.40 -0.5
289,198 - SO0281 0.40 +0.2
289,198 - SO0281 0.40 -0.6
289,203 - SO0281 0.41 -0.4
289,223 - SO0281 0.43 -0.1
289,272 + SO0281 0.47 -2.4
289,279 + SO0281 0.48 +0.5
289,280 - SO0281 0.48 -0.1
289,284 + SO0281 0.48 -0.4
289,284 + SO0281 0.48 -0.2
289,284 + SO0281 0.48 -0.2
289,311 - SO0281 0.51 +0.4
289,332 + SO0281 0.53 +0.4
289,338 - SO0281 0.53 +0.7
289,392 + SO0281 0.58 +0.7
289,410 + SO0281 0.60 -0.9
289,410 + SO0281 0.60 -0.3
289,422 + SO0281 0.61 +0.3
289,428 + SO0281 0.62 +2.7
289,436 - SO0281 0.62 +1.4
289,436 - SO0281 0.62 -0.2
289,436 - SO0281 0.62 +0.9
289,454 + SO0281 0.64 -0.2
289,550 - SO0281 0.73 +2.3
289,654 + SO0281 0.83 -2.5
289,654 + SO0281 0.83 -0.3
289,654 + SO0281 0.83 +0.3
289,654 + SO0281 0.83 -0.5
289,662 + SO0281 0.83 +0.0
289,662 - SO0281 0.83 -0.3
289,662 - SO0281 0.83 -2.2
289,662 - SO0281 0.83 -1.8
289,662 - SO0281 0.83 +1.0
289,669 - SO0281 0.84 +0.7
289,669 - SO0281 0.84 -1.0
289,701 + SO0281 0.87 +0.6
289,701 + SO0281 0.87 -0.5
289,708 + SO0281 0.88 +1.2
289,708 + SO0281 0.88 -0.9
289,731 + SO0281 0.90 +0.8
289,733 + SO0281 0.90 -1.3
289,733 - SO0281 0.90 +1.9
289,749 - -0.4
289,787 + -1.1
289,791 - +0.6
289,797 + +1.9
289,804 + +1.1
289,805 - -2.0
289,809 + +0.7
289,809 + -0.0
289,809 + +1.3
289,809 + -1.1
289,812 - -0.4
289,812 - -0.3
289,817 - +0.6
289,817 - +1.0
289,817 - -1.0
289,817 - +0.9
289,832 - +1.0
289,836 + +1.7
289,836 + -0.5
289,837 + +0.4
289,864 + +0.2
289,884 - +0.6
289,928 - SO0282 0.17 +2.5
289,938 + SO0282 0.19 +4.8
289,938 + SO0282 0.19 +0.8
289,938 + SO0282 0.19 -0.3
289,938 + SO0282 0.19 +0.7
289,941 - SO0282 0.19 +1.2
289,946 - SO0282 0.20 +0.3
289,968 + SO0282 0.24 -0.1
289,968 + SO0282 0.24 +0.2
289,968 + SO0282 0.24 +1.3
289,968 + SO0282 0.24 +0.5
289,976 - SO0282 0.25 +1.7
289,976 - SO0282 0.25 -0.9
289,976 - SO0282 0.25 -0.2
289,976 - SO0282 0.25 -1.9
289,976 - SO0282 0.25 -0.3
289,976 - SO0282 0.25 +2.7
290,002 + SO0282 0.30 +0.8
290,002 + SO0282 0.30 +2.1
290,135 + SO0282 0.52 +0.9
290,156 - SO0282 0.56 -0.1
290,163 + SO0282 0.57 +1.1
290,167 - SO0282 0.58 +0.9
290,171 - SO0282 0.58 +0.8
290,171 - SO0282 0.58 -0.5
290,171 - SO0282 0.58 +1.0
290,171 - SO0282 0.58 -1.4
290,218 + SO0282 0.66 -0.6
290,218 + SO0282 0.66 -0.6
290,238 + SO0282 0.70 -1.7
290,238 - SO0282 0.70 +1.1
290,250 + SO0282 0.72 +1.1
290,256 + SO0282 0.73 -1.1
290,258 + SO0282 0.73 +0.7
290,258 - SO0282 0.73 -0.5
290,265 + SO0282 0.75 +0.3
290,265 + SO0282 0.75 -1.5
290,265 + SO0282 0.75 +0.7
290,265 + SO0282 0.75 -0.4
290,265 + SO0282 0.75 -0.2
290,265 - SO0282 0.75 +1.1
290,266 - SO0282 0.75 +0.9
290,266 - SO0282 0.75 -0.2
290,272 + SO0282 0.76 +0.4
290,272 + SO0282 0.76 +0.4
290,272 + SO0282 0.76 -0.6
290,273 - SO0282 0.76 -0.4
290,275 - SO0282 0.76 -1.0
290,282 + SO0282 0.77 +1.7
290,282 - SO0282 0.77 -0.5
290,291 + SO0282 0.79 -0.4
290,303 - SO0282 0.81 -2.4
290,318 + SO0282 0.84 -0.9
290,327 - SO0282 0.85 +0.4
290,327 - SO0282 0.85 -2.2
290,343 + SO0282 0.88 +0.5
290,343 + SO0282 0.88 -0.6
290,343 + SO0282 0.88 -0.1
290,343 + SO0282 0.88 +1.0
290,343 + SO0282 0.88 -0.5
290,343 + SO0282 0.88 -0.0
290,343 + SO0282 0.88 +1.3
290,343 + SO0282 0.88 -0.8
290,351 - SO0282 0.89 -0.8
290,351 - SO0282 0.89 +0.9
290,351 - SO0282 0.89 +1.6
290,351 - SO0282 0.89 +0.1
290,351 - SO0282 0.89 -0.7
290,351 - SO0282 0.89 -0.0
290,351 - SO0282 0.89 +0.5
290,355 + +1.0
290,378 - +0.3
290,378 - -0.7
290,420 + +0.4
290,428 - -0.6
290,428 - -0.8
290,428 - -0.1
290,474 - SO0283 0.10 +1.1
290,533 + SO0283 0.20 +0.1
290,536 - SO0283 0.20 -1.0
290,567 - SO0283 0.25 +1.6
290,567 - SO0283 0.25 +1.3
290,567 - SO0283 0.25 +0.1
290,577 - SO0283 0.27 +0.9
290,581 + SO0283 0.28 -0.1
290,581 + SO0283 0.28 -0.4
290,584 - SO0283 0.28 +0.5
290,597 - SO0283 0.30 +0.7
290,630 + SO0283 0.35 +0.2
290,630 + SO0283 0.35 -0.6
290,631 + SO0283 0.36 +0.3
290,631 + SO0283 0.36 +1.5
290,637 + SO0283 0.37 -1.4
290,638 - SO0283 0.37 +0.5
290,638 - SO0283 0.37 +0.5
290,639 - SO0283 0.37 -1.8
290,642 + SO0283 0.37 -2.4
290,650 + SO0283 0.39 +1.5
290,731 + SO0283 0.52 -0.3
290,733 - SO0283 0.52 -0.6
290,760 - SO0283 0.56 +1.0
290,766 + SO0283 0.57 -0.6
290,766 - SO0283 0.57 -0.4
290,825 - SO0283 0.67 -1.0
290,846 + SO0283 0.70 +0.2
290,860 + SO0283 0.72 -0.7
290,861 + SO0283 0.73 +1.4
290,868 + SO0283 0.74 +0.2
290,869 - SO0283 0.74 +0.3
290,876 - SO0283 0.75 +1.5
290,894 + SO0283 0.78 -3.6
290,932 - SO0283 0.84 +1.9
290,958 - SO0283 0.88 +0.4
290,967 + SO0283 0.90 +0.7
290,967 + SO0283 0.90 -0.7
290,975 - +0.3
290,975 - -0.2
290,975 - +1.2
290,975 - -2.5
290,987 + +0.2
290,987 + -0.2
290,995 - -0.3
290,995 - +0.2
290,995 - -0.3
291,000 - +0.2
291,037 + +0.6
291,043 - -0.2
291,043 - +0.8
291,059 - -0.1
291,093 + SO0284 0.12 +0.8
291,094 + SO0284 0.12 +1.4
291,099 - SO0284 0.13 -0.3
291,101 - SO0284 0.14 +0.6
291,117 + SO0284 0.17 -1.6
291,135 + SO0284 0.20 +0.1
291,135 + SO0284 0.20 +2.1
291,137 - SO0284 0.21 +0.4
291,148 + SO0284 0.23 +0.4
291,161 + SO0284 0.25 +0.7
291,173 + SO0284 0.28 -0.1
291,192 + SO0284 0.31 -0.3
291,196 - SO0284 0.32 +1.2
291,205 + SO0284 0.34 -2.6
291,205 + SO0284 0.34 +0.9
291,213 - SO0284 0.35 +0.3
291,263 - SO0284 0.45 +0.3
291,263 - SO0284 0.45 +1.0
291,354 + SO0284 0.63 -1.6
291,362 - SO0284 0.64 +0.3
291,362 - SO0284 0.64 +0.2
291,389 - SO0284 0.70 -1.1
291,391 + SO0284 0.70 -0.7
291,391 + SO0284 0.70 +0.1
291,391 + SO0284 0.70 -0.5
291,391 + SO0284 0.70 +1.5
291,399 - SO0284 0.72 -0.6
291,399 - SO0284 0.72 +0.2
291,399 - SO0284 0.72 +0.6
291,399 - SO0284 0.72 -0.3
291,408 - SO0284 0.73 +0.9
291,408 - SO0284 0.73 +0.3
291,413 - SO0284 0.74 -2.0
291,413 - SO0284 0.74 +0.3

Or see this region's nucleotide sequence