Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22600

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22600 and AO356_22605 are separated by 110 nucleotides AO356_22600: AO356_22600 - LysR family transcriptional regulator, at 5,051,121 to 5,051,987 _22600 AO356_22605: AO356_22605 - transporter, at 5,052,098 to 5,053,021 _22605 Position (kb) 5051 5052Strain fitness (log2 ratio) -2 -1 0 1 2at 5050.153 kb on + strandat 5050.153 kb on + strandat 5050.153 kb on + strandat 5050.153 kb on + strandat 5050.154 kb on - strandat 5050.159 kb on + strandat 5050.241 kb on + strandat 5050.242 kb on - strandat 5050.321 kb on + strandat 5050.322 kb on - strandat 5050.378 kb on + strandat 5050.398 kb on - strandat 5050.398 kb on - strandat 5050.409 kb on + strandat 5050.416 kb on - strandat 5050.416 kb on - strandat 5050.421 kb on + strandat 5050.505 kb on - strandat 5050.505 kb on - strandat 5050.505 kb on - strandat 5050.549 kb on + strandat 5050.549 kb on + strandat 5050.549 kb on + strandat 5050.549 kb on + strandat 5050.550 kb on - strandat 5050.550 kb on - strandat 5050.550 kb on - strandat 5050.577 kb on + strandat 5050.577 kb on + strandat 5050.578 kb on - strandat 5050.579 kb on + strandat 5050.579 kb on + strandat 5050.580 kb on - strandat 5050.645 kb on - strandat 5050.812 kb on + strandat 5050.813 kb on - strandat 5050.901 kb on + strandat 5050.901 kb on + strandat 5050.901 kb on + strandat 5050.901 kb on + strandat 5050.901 kb on + strandat 5050.901 kb on + strandat 5050.902 kb on - strandat 5051.051 kb on + strandat 5051.051 kb on + strandat 5051.122 kb on + strandat 5051.123 kb on - strandat 5051.123 kb on - strandat 5051.197 kb on + strandat 5051.198 kb on - strandat 5051.272 kb on + strand, within AO356_22600at 5051.509 kb on + strand, within AO356_22600at 5051.510 kb on - strand, within AO356_22600at 5051.510 kb on - strand, within AO356_22600at 5051.853 kb on + strand, within AO356_22600at 5051.853 kb on + strand, within AO356_22600at 5051.854 kb on - strand, within AO356_22600at 5051.854 kb on - strand, within AO356_22600at 5051.854 kb on - strand, within AO356_22600at 5051.854 kb on - strand, within AO356_22600at 5051.854 kb on - strand, within AO356_22600at 5051.854 kb on - strand, within AO356_22600at 5051.856 kb on - strand, within AO356_22600at 5051.856 kb on - strand, within AO356_22600at 5051.856 kb on - strand, within AO356_22600at 5052.030 kb on + strandat 5052.030 kb on + strandat 5052.031 kb on - strandat 5052.062 kb on + strandat 5052.062 kb on + strandat 5052.063 kb on - strandat 5052.063 kb on - strandat 5052.063 kb on - strandat 5052.066 kb on + strandat 5052.198 kb on - strand, within AO356_22605at 5052.198 kb on - strand, within AO356_22605at 5052.233 kb on + strand, within AO356_22605at 5052.233 kb on + strand, within AO356_22605at 5052.233 kb on + strand, within AO356_22605at 5052.234 kb on - strand, within AO356_22605at 5052.234 kb on - strand, within AO356_22605at 5052.395 kb on + strand, within AO356_22605at 5052.395 kb on + strand, within AO356_22605at 5052.395 kb on + strand, within AO356_22605at 5052.396 kb on - strand, within AO356_22605at 5052.435 kb on + strand, within AO356_22605at 5052.519 kb on + strand, within AO356_22605at 5052.519 kb on + strand, within AO356_22605at 5052.519 kb on + strand, within AO356_22605at 5052.520 kb on - strand, within AO356_22605at 5052.520 kb on - strand, within AO356_22605at 5052.577 kb on + strand, within AO356_22605at 5052.578 kb on - strand, within AO356_22605at 5052.594 kb on + strand, within AO356_22605at 5052.629 kb on + strand, within AO356_22605at 5052.630 kb on - strand, within AO356_22605at 5052.630 kb on - strand, within AO356_22605at 5052.630 kb on - strand, within AO356_22605at 5052.652 kb on + strand, within AO356_22605at 5052.652 kb on + strand, within AO356_22605at 5052.652 kb on + strand, within AO356_22605at 5052.653 kb on - strand, within AO356_22605at 5052.686 kb on + strand, within AO356_22605at 5052.816 kb on - strand, within AO356_22605at 5052.830 kb on + strand, within AO356_22605at 5052.831 kb on - strand, within AO356_22605at 5052.831 kb on - strand, within AO356_22605at 5052.831 kb on - strand, within AO356_22605at 5052.831 kb on - strand, within AO356_22605at 5052.875 kb on + strand, within AO356_22605at 5052.875 kb on + strand, within AO356_22605at 5052.876 kb on - strand, within AO356_22605at 5052.876 kb on - strand, within AO356_22605at 5052.876 kb on - strand, within AO356_22605at 5052.876 kb on - strand, within AO356_22605at 5052.912 kb on + strand, within AO356_22605

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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5,050,153 + +0.2
5,050,153 + -0.1
5,050,153 + +0.2
5,050,153 + +1.7
5,050,154 - -0.1
5,050,159 + -2.3
5,050,241 + -0.6
5,050,242 - +0.7
5,050,321 + +2.0
5,050,322 - +0.3
5,050,378 + -0.8
5,050,398 - +1.2
5,050,398 - +0.2
5,050,409 + -0.0
5,050,416 - -0.1
5,050,416 - +0.4
5,050,421 + -1.4
5,050,505 - +0.0
5,050,505 - -1.2
5,050,505 - +0.4
5,050,549 + +0.9
5,050,549 + +0.7
5,050,549 + +1.0
5,050,549 + +0.1
5,050,550 - -1.2
5,050,550 - -0.3
5,050,550 - +1.4
5,050,577 + +0.5
5,050,577 + +0.5
5,050,578 - -0.2
5,050,579 + +0.6
5,050,579 + +0.8
5,050,580 - +0.0
5,050,645 - +0.2
5,050,812 + +0.6
5,050,813 - +1.2
5,050,901 + -0.0
5,050,901 + +0.1
5,050,901 + +0.1
5,050,901 + +0.3
5,050,901 + -0.1
5,050,901 + -0.6
5,050,902 - +0.2
5,051,051 + +0.3
5,051,051 + -0.0
5,051,122 + +0.6
5,051,123 - +0.3
5,051,123 - -0.1
5,051,197 + -0.5
5,051,198 - -0.7
5,051,272 + AO356_22600 0.17 -0.2
5,051,509 + AO356_22600 0.45 -0.6
5,051,510 - AO356_22600 0.45 +0.8
5,051,510 - AO356_22600 0.45 -0.3
5,051,853 + AO356_22600 0.84 +0.3
5,051,853 + AO356_22600 0.84 -2.5
5,051,854 - AO356_22600 0.85 +0.4
5,051,854 - AO356_22600 0.85 +0.2
5,051,854 - AO356_22600 0.85 -1.2
5,051,854 - AO356_22600 0.85 -0.0
5,051,854 - AO356_22600 0.85 -0.6
5,051,854 - AO356_22600 0.85 -0.3
5,051,856 - AO356_22600 0.85 +0.6
5,051,856 - AO356_22600 0.85 +2.7
5,051,856 - AO356_22600 0.85 +1.2
5,052,030 + +0.8
5,052,030 + +0.3
5,052,031 - +0.2
5,052,062 + -0.3
5,052,062 + +0.1
5,052,063 - -0.2
5,052,063 - -0.8
5,052,063 - +0.0
5,052,066 + -1.5
5,052,198 - AO356_22605 0.11 -0.5
5,052,198 - AO356_22605 0.11 +0.6
5,052,233 + AO356_22605 0.15 -0.5
5,052,233 + AO356_22605 0.15 -0.7
5,052,233 + AO356_22605 0.15 -1.7
5,052,234 - AO356_22605 0.15 +0.1
5,052,234 - AO356_22605 0.15 +0.9
5,052,395 + AO356_22605 0.32 +0.5
5,052,395 + AO356_22605 0.32 -1.3
5,052,395 + AO356_22605 0.32 +0.1
5,052,396 - AO356_22605 0.32 -0.8
5,052,435 + AO356_22605 0.36 +0.3
5,052,519 + AO356_22605 0.46 -0.6
5,052,519 + AO356_22605 0.46 +0.5
5,052,519 + AO356_22605 0.46 +0.2
5,052,520 - AO356_22605 0.46 -0.5
5,052,520 - AO356_22605 0.46 +0.8
5,052,577 + AO356_22605 0.52 +0.4
5,052,578 - AO356_22605 0.52 +1.2
5,052,594 + AO356_22605 0.54 -1.3
5,052,629 + AO356_22605 0.57 +0.6
5,052,630 - AO356_22605 0.58 -0.9
5,052,630 - AO356_22605 0.58 +1.2
5,052,630 - AO356_22605 0.58 +1.6
5,052,652 + AO356_22605 0.60 -1.3
5,052,652 + AO356_22605 0.60 +0.9
5,052,652 + AO356_22605 0.60 -0.2
5,052,653 - AO356_22605 0.60 +0.2
5,052,686 + AO356_22605 0.64 -0.0
5,052,816 - AO356_22605 0.78 +1.9
5,052,830 + AO356_22605 0.79 +0.1
5,052,831 - AO356_22605 0.79 +0.5
5,052,831 - AO356_22605 0.79 -0.2
5,052,831 - AO356_22605 0.79 -0.5
5,052,831 - AO356_22605 0.79 -0.6
5,052,875 + AO356_22605 0.84 +0.6
5,052,875 + AO356_22605 0.84 -0.6
5,052,876 - AO356_22605 0.84 +0.0
5,052,876 - AO356_22605 0.84 -0.3
5,052,876 - AO356_22605 0.84 -0.5
5,052,876 - AO356_22605 0.84 +0.0
5,052,912 + AO356_22605 0.88 +0.3

Or see this region's nucleotide sequence