Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22540

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22535 and ABZR87_RS22540 are separated by 141 nucleotidesABZR87_RS22540 and ABZR87_RS22545 are separated by 2 nucleotides ABZR87_RS22535: ABZR87_RS22535 - methyl-accepting chemotaxis protein, at 1,413,787 to 1,415,334 _RS22535 ABZR87_RS22540: ABZR87_RS22540 - GNAT family N-acetyltransferase, at 1,415,476 to 1,415,967 _RS22540 ABZR87_RS22545: ABZR87_RS22545 - alkaline phosphatase family protein, at 1,415,970 to 1,417,376 _RS22545 Position (kb) 1415 1416Strain fitness (log2 ratio) -1 0 1 2at 1414.715 kb on + strand, within ABZR87_RS22535at 1414.715 kb on + strand, within ABZR87_RS22535at 1414.715 kb on + strand, within ABZR87_RS22535at 1414.715 kb on + strand, within ABZR87_RS22535at 1414.715 kb on + strand, within ABZR87_RS22535at 1414.715 kb on + strand, within ABZR87_RS22535at 1414.716 kb on - strand, within ABZR87_RS22535at 1414.716 kb on - strand, within ABZR87_RS22535at 1414.756 kb on - strand, within ABZR87_RS22535at 1414.803 kb on - strand, within ABZR87_RS22535at 1414.859 kb on + strand, within ABZR87_RS22535at 1414.860 kb on - strand, within ABZR87_RS22535at 1414.860 kb on - strand, within ABZR87_RS22535at 1414.860 kb on - strand, within ABZR87_RS22535at 1414.860 kb on - strand, within ABZR87_RS22535at 1414.860 kb on - strand, within ABZR87_RS22535at 1414.999 kb on - strand, within ABZR87_RS22535at 1415.334 kb on + strandat 1415.334 kb on + strandat 1415.334 kb on + strandat 1415.334 kb on + strandat 1415.334 kb on + strandat 1415.335 kb on - strandat 1415.335 kb on - strandat 1415.335 kb on - strandat 1415.335 kb on - strandat 1415.335 kb on - strandat 1415.707 kb on + strand, within ABZR87_RS22540at 1415.710 kb on - strand, within ABZR87_RS22540at 1415.711 kb on + strand, within ABZR87_RS22540at 1415.711 kb on + strand, within ABZR87_RS22540at 1415.711 kb on + strand, within ABZR87_RS22540at 1415.712 kb on - strand, within ABZR87_RS22540at 1415.712 kb on - strand, within ABZR87_RS22540at 1415.735 kb on + strand, within ABZR87_RS22540at 1415.735 kb on + strand, within ABZR87_RS22540at 1415.735 kb on + strand, within ABZR87_RS22540at 1415.787 kb on + strand, within ABZR87_RS22540at 1415.788 kb on - strand, within ABZR87_RS22540at 1415.788 kb on - strand, within ABZR87_RS22540at 1415.852 kb on + strand, within ABZR87_RS22540at 1415.852 kb on + strand, within ABZR87_RS22540at 1415.853 kb on - strand, within ABZR87_RS22540at 1415.933 kb on - strandat 1415.933 kb on - strandat 1416.325 kb on + strand, within ABZR87_RS22545at 1416.326 kb on - strand, within ABZR87_RS22545at 1416.326 kb on - strand, within ABZR87_RS22545at 1416.326 kb on - strand, within ABZR87_RS22545at 1416.326 kb on - strand, within ABZR87_RS22545at 1416.326 kb on - strand, within ABZR87_RS22545at 1416.364 kb on + strand, within ABZR87_RS22545at 1416.365 kb on - strand, within ABZR87_RS22545at 1416.595 kb on + strand, within ABZR87_RS22545at 1416.595 kb on + strand, within ABZR87_RS22545at 1416.595 kb on + strand, within ABZR87_RS22545at 1416.596 kb on - strand, within ABZR87_RS22545at 1416.596 kb on - strand, within ABZR87_RS22545at 1416.596 kb on - strand, within ABZR87_RS22545at 1416.596 kb on - strand, within ABZR87_RS22545at 1416.596 kb on - strand, within ABZR87_RS22545at 1416.622 kb on + strand, within ABZR87_RS22545at 1416.647 kb on + strand, within ABZR87_RS22545at 1416.648 kb on - strand, within ABZR87_RS22545at 1416.676 kb on + strand, within ABZR87_RS22545at 1416.677 kb on - strand, within ABZR87_RS22545at 1416.689 kb on + strand, within ABZR87_RS22545at 1416.697 kb on + strand, within ABZR87_RS22545at 1416.808 kb on + strand, within ABZR87_RS22545at 1416.808 kb on + strand, within ABZR87_RS22545at 1416.809 kb on - strand, within ABZR87_RS22545at 1416.811 kb on + strand, within ABZR87_RS22545at 1416.812 kb on - strand, within ABZR87_RS22545at 1416.812 kb on - strand, within ABZR87_RS22545at 1416.871 kb on + strand, within ABZR87_RS22545at 1416.871 kb on + strand, within ABZR87_RS22545at 1416.871 kb on + strand, within ABZR87_RS22545at 1416.872 kb on - strand, within ABZR87_RS22545

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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1,414,715 + ABZR87_RS22535 0.60 -0.2
1,414,715 + ABZR87_RS22535 0.60 +0.2
1,414,715 + ABZR87_RS22535 0.60 -1.2
1,414,715 + ABZR87_RS22535 0.60 +0.2
1,414,715 + ABZR87_RS22535 0.60 +0.1
1,414,715 + ABZR87_RS22535 0.60 -0.9
1,414,716 - ABZR87_RS22535 0.60 +1.1
1,414,716 - ABZR87_RS22535 0.60 +0.4
1,414,756 - ABZR87_RS22535 0.63 -0.4
1,414,803 - ABZR87_RS22535 0.66 -1.0
1,414,859 + ABZR87_RS22535 0.69 +0.2
1,414,860 - ABZR87_RS22535 0.69 +0.0
1,414,860 - ABZR87_RS22535 0.69 -0.6
1,414,860 - ABZR87_RS22535 0.69 -0.4
1,414,860 - ABZR87_RS22535 0.69 -0.9
1,414,860 - ABZR87_RS22535 0.69 -0.5
1,414,999 - ABZR87_RS22535 0.78 +0.1
1,415,334 + +0.1
1,415,334 + -0.4
1,415,334 + +1.2
1,415,334 + -0.8
1,415,334 + +0.1
1,415,335 - +0.2
1,415,335 - -0.2
1,415,335 - -0.5
1,415,335 - -0.2
1,415,335 - -0.4
1,415,707 + ABZR87_RS22540 0.47 +1.6
1,415,710 - ABZR87_RS22540 0.48 -0.3
1,415,711 + ABZR87_RS22540 0.48 -0.1
1,415,711 + ABZR87_RS22540 0.48 +0.3
1,415,711 + ABZR87_RS22540 0.48 -1.2
1,415,712 - ABZR87_RS22540 0.48 +0.3
1,415,712 - ABZR87_RS22540 0.48 +0.8
1,415,735 + ABZR87_RS22540 0.53 -0.9
1,415,735 + ABZR87_RS22540 0.53 +2.1
1,415,735 + ABZR87_RS22540 0.53 +0.3
1,415,787 + ABZR87_RS22540 0.63 -0.7
1,415,788 - ABZR87_RS22540 0.63 +0.2
1,415,788 - ABZR87_RS22540 0.63 -1.0
1,415,852 + ABZR87_RS22540 0.76 +0.7
1,415,852 + ABZR87_RS22540 0.76 +0.9
1,415,853 - ABZR87_RS22540 0.77 +0.2
1,415,933 - -0.9
1,415,933 - +0.4
1,416,325 + ABZR87_RS22545 0.25 -0.3
1,416,326 - ABZR87_RS22545 0.25 -0.6
1,416,326 - ABZR87_RS22545 0.25 +0.3
1,416,326 - ABZR87_RS22545 0.25 +0.0
1,416,326 - ABZR87_RS22545 0.25 -0.5
1,416,326 - ABZR87_RS22545 0.25 +2.1
1,416,364 + ABZR87_RS22545 0.28 -0.3
1,416,365 - ABZR87_RS22545 0.28 +0.4
1,416,595 + ABZR87_RS22545 0.44 +0.3
1,416,595 + ABZR87_RS22545 0.44 +0.1
1,416,595 + ABZR87_RS22545 0.44 +0.5
1,416,596 - ABZR87_RS22545 0.44 +1.5
1,416,596 - ABZR87_RS22545 0.44 -0.8
1,416,596 - ABZR87_RS22545 0.44 -0.5
1,416,596 - ABZR87_RS22545 0.44 +0.1
1,416,596 - ABZR87_RS22545 0.44 -0.2
1,416,622 + ABZR87_RS22545 0.46 -0.2
1,416,647 + ABZR87_RS22545 0.48 -0.8
1,416,648 - ABZR87_RS22545 0.48 -0.2
1,416,676 + ABZR87_RS22545 0.50 -0.5
1,416,677 - ABZR87_RS22545 0.50 +2.5
1,416,689 + ABZR87_RS22545 0.51 +0.8
1,416,697 + ABZR87_RS22545 0.52 +0.4
1,416,808 + ABZR87_RS22545 0.60 +0.7
1,416,808 + ABZR87_RS22545 0.60 -0.6
1,416,809 - ABZR87_RS22545 0.60 -0.9
1,416,811 + ABZR87_RS22545 0.60 -0.7
1,416,812 - ABZR87_RS22545 0.60 +1.2
1,416,812 - ABZR87_RS22545 0.60 -0.4
1,416,871 + ABZR87_RS22545 0.64 -0.3
1,416,871 + ABZR87_RS22545 0.64 +0.2
1,416,871 + ABZR87_RS22545 0.64 -0.6
1,416,872 - ABZR87_RS22545 0.64 +2.1

Or see this region's nucleotide sequence