Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21590 and ABZR87_RS21595 are separated by 74 nucleotides ABZR87_RS21595 and ABZR87_RS21600 are separated by 97 nucleotides ABZR87_RS21600 and ABZR87_RS21605 are separated by 0 nucleotides ABZR87_RS21605 and ABZR87_RS21610 overlap by 38 nucleotides
ABZR87_RS21590: ABZR87_RS21590 - NAD(P)H-dependent oxidoreductase, at 1,226,045 to 1,226,689
_RS21590
ABZR87_RS21595: ABZR87_RS21595 - Rrf2 family transcriptional regulator, at 1,226,764 to 1,227,201
_RS21595
ABZR87_RS21600: ABZR87_RS21600 - NAD(P)-dependent oxidoreductase, at 1,227,299 to 1,227,910
_RS21600
ABZR87_RS21605: ABZR87_RS21605 - hypothetical protein, at 1,227,911 to 1,228,519
_RS21605
ABZR87_RS21610: ABZR87_RS21610 - ATP-binding protein, at 1,228,482 to 1,229,969
_RS21610
Position (kb) 1227
1228 Strain fitness (log2 ratio) -1
0
1 at 1226.324 kb on + strand, within ABZR87_RS21590 at 1226.324 kb on + strand, within ABZR87_RS21590 at 1226.325 kb on - strand, within ABZR87_RS21590 at 1226.325 kb on - strand, within ABZR87_RS21590 at 1226.474 kb on + strand, within ABZR87_RS21590 at 1226.509 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.547 kb on - strand, within ABZR87_RS21590 at 1226.734 kb on + strand at 1226.758 kb on - strand at 1226.769 kb on + strand at 1226.769 kb on + strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.770 kb on - strand at 1226.799 kb on + strand at 1227.002 kb on + strand, within ABZR87_RS21595 at 1227.220 kb on + strand at 1227.257 kb on + strand at 1227.259 kb on + strand at 1227.497 kb on + strand, within ABZR87_RS21600 at 1227.497 kb on + strand, within ABZR87_RS21600 at 1227.498 kb on - strand, within ABZR87_RS21600 at 1227.498 kb on - strand, within ABZR87_RS21600 at 1227.653 kb on + strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.654 kb on - strand, within ABZR87_RS21600 at 1227.763 kb on + strand, within ABZR87_RS21600 at 1227.990 kb on + strand, within ABZR87_RS21605 at 1227.991 kb on - strand, within ABZR87_RS21605 at 1228.237 kb on + strand, within ABZR87_RS21605 at 1228.237 kb on + strand, within ABZR87_RS21605 at 1228.237 kb on + strand, within ABZR87_RS21605 at 1228.237 kb on + strand, within ABZR87_RS21605 at 1228.237 kb on + strand, within ABZR87_RS21605 at 1228.237 kb on + strand, within ABZR87_RS21605 at 1228.237 kb on + strand, within ABZR87_RS21605 at 1228.238 kb on - strand, within ABZR87_RS21605 at 1228.238 kb on - strand, within ABZR87_RS21605 at 1228.238 kb on - strand, within ABZR87_RS21605 at 1228.646 kb on + strand, within ABZR87_RS21610 at 1228.706 kb on - strand, within ABZR87_RS21610 at 1228.706 kb on - strand, within ABZR87_RS21610 at 1228.848 kb on + strand, within ABZR87_RS21610 at 1228.849 kb on - strand, within ABZR87_RS21610
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,226,324 + ABZR87_RS21590 0.43 -0.4 1,226,324 + ABZR87_RS21590 0.43 -1.3 1,226,325 - ABZR87_RS21590 0.43 +1.0 1,226,325 - ABZR87_RS21590 0.43 +0.3 1,226,474 + ABZR87_RS21590 0.67 -0.1 1,226,509 - ABZR87_RS21590 0.72 -0.0 1,226,547 - ABZR87_RS21590 0.78 -0.1 1,226,547 - ABZR87_RS21590 0.78 +0.3 1,226,547 - ABZR87_RS21590 0.78 -0.8 1,226,734 + +1.5 1,226,758 - +0.1 1,226,769 + +0.4 1,226,769 + -0.0 1,226,770 - -0.3 1,226,770 - -0.0 1,226,770 - -0.1 1,226,770 - +0.5 1,226,799 + -0.1 1,227,002 + ABZR87_RS21595 0.54 +0.2 1,227,220 + -0.1 1,227,257 + +0.6 1,227,259 + +1.0 1,227,497 + ABZR87_RS21600 0.32 +0.1 1,227,497 + ABZR87_RS21600 0.32 +0.3 1,227,498 - ABZR87_RS21600 0.33 +0.2 1,227,498 - ABZR87_RS21600 0.33 -1.2 1,227,653 + ABZR87_RS21600 0.58 -0.1 1,227,654 - ABZR87_RS21600 0.58 +0.9 1,227,654 - ABZR87_RS21600 0.58 +0.6 1,227,654 - ABZR87_RS21600 0.58 +0.7 1,227,763 + ABZR87_RS21600 0.76 +1.0 1,227,990 + ABZR87_RS21605 0.13 -1.4 1,227,991 - ABZR87_RS21605 0.13 -0.7 1,228,237 + ABZR87_RS21605 0.54 -1.0 1,228,237 + ABZR87_RS21605 0.54 +0.2 1,228,237 + ABZR87_RS21605 0.54 +0.9 1,228,237 + ABZR87_RS21605 0.54 +1.2 1,228,237 + ABZR87_RS21605 0.54 +0.2 1,228,237 + ABZR87_RS21605 0.54 -1.0 1,228,237 + ABZR87_RS21605 0.54 -0.8 1,228,238 - ABZR87_RS21605 0.54 +0.8 1,228,238 - ABZR87_RS21605 0.54 +0.0 1,228,238 - ABZR87_RS21605 0.54 +0.4 1,228,646 + ABZR87_RS21610 0.11 -0.6 1,228,706 - ABZR87_RS21610 0.15 -0.4 1,228,706 - ABZR87_RS21610 0.15 -1.0 1,228,848 + ABZR87_RS21610 0.25 +1.1 1,228,849 - ABZR87_RS21610 0.25 +0.4
Or see this region's nucleotide sequence