Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21560 and ABZR87_RS21565 are separated by 49 nucleotides ABZR87_RS21565 and ABZR87_RS21570 are separated by 20 nucleotides ABZR87_RS21570 and ABZR87_RS21575 are separated by 38 nucleotides
ABZR87_RS21560: ABZR87_RS21560 - Lrp/AsnC family transcriptional regulator, at 1,220,826 to 1,221,320
_RS21560
ABZR87_RS21565: ABZR87_RS21565 - cupin domain-containing protein, at 1,221,370 to 1,222,089
_RS21565
ABZR87_RS21570: ABZR87_RS21570 - FAD-binding oxidoreductase, at 1,222,110 to 1,223,435
_RS21570
ABZR87_RS21575: ABZR87_RS21575 - amidohydrolase, at 1,223,474 to 1,224,667
_RS21575
Position (kb) 1222
1223
1224 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1221.148 kb on - strand, within ABZR87_RS21560 at 1221.189 kb on + strand, within ABZR87_RS21560 at 1221.240 kb on + strand, within ABZR87_RS21560 at 1221.241 kb on - strand, within ABZR87_RS21560 at 1221.249 kb on + strand, within ABZR87_RS21560 at 1221.250 kb on - strand, within ABZR87_RS21560 at 1221.250 kb on - strand, within ABZR87_RS21560 at 1221.555 kb on + strand, within ABZR87_RS21565 at 1221.556 kb on - strand, within ABZR87_RS21565 at 1221.681 kb on + strand, within ABZR87_RS21565 at 1221.681 kb on + strand, within ABZR87_RS21565 at 1221.860 kb on - strand, within ABZR87_RS21565 at 1221.931 kb on + strand, within ABZR87_RS21565 at 1221.931 kb on + strand, within ABZR87_RS21565 at 1221.932 kb on - strand, within ABZR87_RS21565 at 1221.932 kb on - strand, within ABZR87_RS21565 at 1222.063 kb on + strand at 1222.063 kb on + strand at 1222.064 kb on - strand at 1222.064 kb on - strand at 1222.064 kb on - strand at 1222.209 kb on + strand at 1222.209 kb on + strand at 1222.212 kb on + strand at 1222.212 kb on + strand at 1222.212 kb on + strand at 1222.212 kb on + strand at 1222.213 kb on - strand at 1222.416 kb on + strand, within ABZR87_RS21570 at 1222.417 kb on - strand, within ABZR87_RS21570 at 1222.417 kb on - strand, within ABZR87_RS21570 at 1222.417 kb on - strand, within ABZR87_RS21570 at 1222.417 kb on - strand, within ABZR87_RS21570 at 1222.693 kb on + strand, within ABZR87_RS21570 at 1222.908 kb on + strand, within ABZR87_RS21570 at 1222.909 kb on - strand, within ABZR87_RS21570 at 1222.909 kb on - strand, within ABZR87_RS21570 at 1223.145 kb on + strand, within ABZR87_RS21570 at 1223.146 kb on - strand, within ABZR87_RS21570 at 1223.309 kb on + strand at 1223.433 kb on + strand at 1223.433 kb on + strand at 1223.434 kb on - strand at 1223.586 kb on + strand at 1223.634 kb on + strand, within ABZR87_RS21575 at 1223.635 kb on - strand, within ABZR87_RS21575 at 1223.782 kb on - strand, within ABZR87_RS21575 at 1223.891 kb on + strand, within ABZR87_RS21575 at 1223.891 kb on + strand, within ABZR87_RS21575 at 1224.186 kb on + strand, within ABZR87_RS21575 at 1224.186 kb on + strand, within ABZR87_RS21575
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,221,148 - ABZR87_RS21560 0.65 -0.1 1,221,189 + ABZR87_RS21560 0.73 +0.7 1,221,240 + ABZR87_RS21560 0.84 -0.5 1,221,241 - ABZR87_RS21560 0.84 -0.2 1,221,249 + ABZR87_RS21560 0.85 -0.5 1,221,250 - ABZR87_RS21560 0.86 -0.6 1,221,250 - ABZR87_RS21560 0.86 +0.0 1,221,555 + ABZR87_RS21565 0.26 +0.1 1,221,556 - ABZR87_RS21565 0.26 +0.5 1,221,681 + ABZR87_RS21565 0.43 +3.6 1,221,681 + ABZR87_RS21565 0.43 -1.8 1,221,860 - ABZR87_RS21565 0.68 -0.1 1,221,931 + ABZR87_RS21565 0.78 +0.3 1,221,931 + ABZR87_RS21565 0.78 +0.0 1,221,932 - ABZR87_RS21565 0.78 -0.5 1,221,932 - ABZR87_RS21565 0.78 +0.6 1,222,063 + -0.1 1,222,063 + -0.5 1,222,064 - +0.0 1,222,064 - +0.3 1,222,064 - -0.7 1,222,209 + +0.1 1,222,209 + -0.0 1,222,212 + +0.7 1,222,212 + +3.9 1,222,212 + -0.1 1,222,212 + +0.2 1,222,213 - -0.2 1,222,416 + ABZR87_RS21570 0.23 -0.6 1,222,417 - ABZR87_RS21570 0.23 -0.5 1,222,417 - ABZR87_RS21570 0.23 +1.0 1,222,417 - ABZR87_RS21570 0.23 +0.9 1,222,417 - ABZR87_RS21570 0.23 +0.5 1,222,693 + ABZR87_RS21570 0.44 +0.0 1,222,908 + ABZR87_RS21570 0.60 +0.4 1,222,909 - ABZR87_RS21570 0.60 +0.5 1,222,909 - ABZR87_RS21570 0.60 +1.0 1,223,145 + ABZR87_RS21570 0.78 +0.2 1,223,146 - ABZR87_RS21570 0.78 +0.2 1,223,309 + +0.3 1,223,433 + -0.0 1,223,433 + +0.9 1,223,434 - -0.3 1,223,586 + +1.9 1,223,634 + ABZR87_RS21575 0.13 +1.6 1,223,635 - ABZR87_RS21575 0.13 +0.2 1,223,782 - ABZR87_RS21575 0.26 +0.4 1,223,891 + ABZR87_RS21575 0.35 -1.4 1,223,891 + ABZR87_RS21575 0.35 +0.1 1,224,186 + ABZR87_RS21575 0.60 -0.9 1,224,186 + ABZR87_RS21575 0.60 +0.8
Or see this region's nucleotide sequence