Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21140 and ABZR87_RS21145 are separated by 101 nucleotides ABZR87_RS21145 and ABZR87_RS21150 are separated by 14 nucleotides ABZR87_RS21150 and ABZR87_RS21155 are separated by 3 nucleotides
ABZR87_RS21140: ABZR87_RS21140 - dimethylsulfone monooxygenase SfnG, at 1,127,011 to 1,128,174
_RS21140
ABZR87_RS21145: ABZR87_RS21145 - ABC transporter ATP-binding protein, at 1,128,276 to 1,129,190
_RS21145
ABZR87_RS21150: ABZR87_RS21150 - branched-chain amino acid ABC transporter permease, at 1,129,205 to 1,130,086
_RS21150
ABZR87_RS21155: ABZR87_RS21155 - branched-chain amino acid ABC transporter permease, at 1,130,090 to 1,131,169
_RS21155
Position (kb)
1128
1129
1130 Strain fitness (log2 ratio)
-2
-1
0
1 at 1127.441 kb on - strand, within ABZR87_RS21140 at 1127.533 kb on + strand, within ABZR87_RS21140 at 1128.055 kb on - strand, within ABZR87_RS21140 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.802 kb on + strand, within ABZR87_RS21145 at 1128.803 kb on - strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1129.143 kb on + strand at 1129.143 kb on + strand at 1129.144 kb on - strand at 1129.144 kb on - strand at 1129.256 kb on + strand at 1129.257 kb on - strand at 1129.289 kb on + strand at 1129.290 kb on - strand at 1129.290 kb on - strand at 1129.512 kb on - strand, within ABZR87_RS21150 at 1129.555 kb on - strand, within ABZR87_RS21150 at 1129.683 kb on - strand, within ABZR87_RS21150 at 1129.683 kb on - strand, within ABZR87_RS21150 at 1129.967 kb on + strand, within ABZR87_RS21150 at 1129.968 kb on - strand, within ABZR87_RS21150 at 1130.012 kb on + strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,127,441 - ABZR87_RS21140 0.37 +1.0 1,127,533 + ABZR87_RS21140 0.45 -0.5 1,128,055 - ABZR87_RS21140 0.90 +0.4 1,128,555 + ABZR87_RS21145 0.30 -1.5 1,128,555 + ABZR87_RS21145 0.30 +0.3 1,128,802 + ABZR87_RS21145 0.57 -0.5 1,128,803 - ABZR87_RS21145 0.58 +0.4 1,128,913 + ABZR87_RS21145 0.70 -1.2 1,128,913 + ABZR87_RS21145 0.70 -0.1 1,128,913 + ABZR87_RS21145 0.70 -2.0 1,128,913 + ABZR87_RS21145 0.70 -2.5 1,129,143 + +0.2 1,129,143 + -0.4 1,129,144 - -0.6 1,129,144 - -1.2 1,129,256 + -0.7 1,129,257 - -0.1 1,129,289 + +1.1 1,129,290 - +0.6 1,129,290 - -0.0 1,129,512 - ABZR87_RS21150 0.35 -0.8 1,129,555 - ABZR87_RS21150 0.40 +0.5 1,129,683 - ABZR87_RS21150 0.54 +0.6 1,129,683 - ABZR87_RS21150 0.54 +0.7 1,129,967 + ABZR87_RS21150 0.86 -2.0 1,129,968 - ABZR87_RS21150 0.87 -0.7 1,130,012 + -0.5 1,130,013 - -1.4 1,130,013 - -0.8 1,130,013 - -0.4 1,130,013 - -0.1
Or see this region's nucleotide sequence