Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21115 and ABZR87_RS21120 are separated by 158 nucleotides ABZR87_RS21120 and ABZR87_RS21125 are separated by 187 nucleotides ABZR87_RS21125 and ABZR87_RS21130 are separated by 10 nucleotides
ABZR87_RS21115: ABZR87_RS21115 - NAD(P)-dependent alcohol dehydrogenase, at 1,122,567 to 1,123,574
_RS21115
ABZR87_RS21120: ABZR87_RS21120 - helix-turn-helix domain-containing protein, at 1,123,733 to 1,124,119
_RS21120
ABZR87_RS21125: ABZR87_RS21125 - YciI family protein, at 1,124,307 to 1,124,738
_RS21125
ABZR87_RS21130: ABZR87_RS21130 - RNA polymerase sigma factor, at 1,124,749 to 1,126,032
_RS21130
Position (kb) 1124
1125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1123.562 kb on + strand at 1123.563 kb on - strand at 1123.563 kb on - strand at 1123.589 kb on + strand at 1123.589 kb on + strand at 1123.590 kb on - strand at 1123.691 kb on + strand at 1123.949 kb on + strand, within ABZR87_RS21120 at 1123.950 kb on - strand, within ABZR87_RS21120 at 1123.976 kb on + strand, within ABZR87_RS21120 at 1123.976 kb on + strand, within ABZR87_RS21120 at 1123.976 kb on + strand, within ABZR87_RS21120 at 1123.977 kb on - strand, within ABZR87_RS21120 at 1123.977 kb on - strand, within ABZR87_RS21120 at 1123.977 kb on - strand, within ABZR87_RS21120 at 1124.153 kb on - strand at 1124.185 kb on + strand at 1124.185 kb on + strand at 1124.186 kb on - strand at 1124.186 kb on - strand at 1124.195 kb on + strand at 1124.195 kb on + strand at 1124.196 kb on - strand at 1124.211 kb on + strand at 1124.211 kb on + strand at 1124.212 kb on - strand at 1124.212 kb on - strand at 1124.251 kb on + strand at 1124.252 kb on - strand at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.541 kb on + strand, within ABZR87_RS21125 at 1124.737 kb on - strand at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.352 kb on + strand, within ABZR87_RS21130 at 1125.374 kb on - strand, within ABZR87_RS21130 at 1125.586 kb on + strand, within ABZR87_RS21130 at 1125.587 kb on - strand, within ABZR87_RS21130 at 1125.656 kb on - strand, within ABZR87_RS21130 at 1125.656 kb on - strand, within ABZR87_RS21130
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,123,562 + -0.4 1,123,563 - -0.1 1,123,563 - +0.8 1,123,589 + -1.2 1,123,589 + -0.6 1,123,590 - -0.8 1,123,691 + -0.2 1,123,949 + ABZR87_RS21120 0.56 +0.7 1,123,950 - ABZR87_RS21120 0.56 -0.7 1,123,976 + ABZR87_RS21120 0.63 +0.1 1,123,976 + ABZR87_RS21120 0.63 -3.1 1,123,976 + ABZR87_RS21120 0.63 -0.8 1,123,977 - ABZR87_RS21120 0.63 +0.6 1,123,977 - ABZR87_RS21120 0.63 -0.3 1,123,977 - ABZR87_RS21120 0.63 -0.1 1,124,153 - +1.1 1,124,185 + +0.5 1,124,185 + -1.2 1,124,186 - +0.0 1,124,186 - +1.3 1,124,195 + +0.3 1,124,195 + -0.8 1,124,196 - +0.8 1,124,211 + +0.8 1,124,211 + +0.0 1,124,212 - -0.6 1,124,212 - +2.7 1,124,251 + -0.6 1,124,252 - +0.7 1,124,394 + ABZR87_RS21125 0.20 -0.0 1,124,394 + ABZR87_RS21125 0.20 -0.6 1,124,394 + ABZR87_RS21125 0.20 -0.5 1,124,394 + ABZR87_RS21125 0.20 -0.2 1,124,394 + ABZR87_RS21125 0.20 -0.0 1,124,394 + ABZR87_RS21125 0.20 -0.7 1,124,541 + ABZR87_RS21125 0.54 -1.2 1,124,737 - -1.0 1,125,352 + ABZR87_RS21130 0.47 -0.1 1,125,352 + ABZR87_RS21130 0.47 -0.5 1,125,352 + ABZR87_RS21130 0.47 -0.3 1,125,352 + ABZR87_RS21130 0.47 +0.1 1,125,352 + ABZR87_RS21130 0.47 +0.4 1,125,352 + ABZR87_RS21130 0.47 -0.7 1,125,352 + ABZR87_RS21130 0.47 +0.5 1,125,352 + ABZR87_RS21130 0.47 -0.0 1,125,374 - ABZR87_RS21130 0.49 -0.2 1,125,586 + ABZR87_RS21130 0.65 -2.7 1,125,587 - ABZR87_RS21130 0.65 +0.1 1,125,656 - ABZR87_RS21130 0.71 +0.4 1,125,656 - ABZR87_RS21130 0.71 +0.5
Or see this region's nucleotide sequence