Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21030 and ABZR87_RS21035 are separated by 11 nucleotides ABZR87_RS21035 and ABZR87_RS21040 overlap by 12 nucleotides ABZR87_RS21040 and ABZR87_RS21045 are separated by 15 nucleotides
ABZR87_RS21030: ABZR87_RS21030 - chalcone isomerase family protein, at 1,103,423 to 1,103,902
_RS21030
ABZR87_RS21035: ABZR87_RS21035 - lipocalin family protein, at 1,103,914 to 1,104,546
_RS21035
ABZR87_RS21040: ABZR87_RS21040 - DUF2878 domain-containing protein, at 1,104,535 to 1,105,065
_RS21040
ABZR87_RS21045: ABZR87_RS21045 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,105,081 to 1,106,181
_RS21045
Position (kb)
1104
1105
1106 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.585 kb on + strand, within ABZR87_RS21030 at 1103.585 kb on + strand, within ABZR87_RS21030 at 1103.586 kb on - strand, within ABZR87_RS21030 at 1103.627 kb on - strand, within ABZR87_RS21030 at 1103.747 kb on + strand, within ABZR87_RS21030 at 1103.747 kb on + strand, within ABZR87_RS21030 at 1103.915 kb on + strand at 1103.915 kb on + strand at 1103.915 kb on + strand at 1103.916 kb on - strand at 1104.131 kb on + strand, within ABZR87_RS21035 at 1104.131 kb on + strand, within ABZR87_RS21035 at 1104.131 kb on + strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.152 kb on + strand, within ABZR87_RS21035 at 1104.153 kb on - strand, within ABZR87_RS21035 at 1104.153 kb on - strand, within ABZR87_RS21035 at 1104.266 kb on + strand, within ABZR87_RS21035 at 1104.266 kb on + strand, within ABZR87_RS21035 at 1104.266 kb on + strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.312 kb on - strand, within ABZR87_RS21035 at 1104.342 kb on - strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.363 kb on - strand, within ABZR87_RS21035 at 1104.363 kb on - strand, within ABZR87_RS21035 at 1104.377 kb on + strand, within ABZR87_RS21035 at 1104.378 kb on - strand, within ABZR87_RS21035 at 1104.559 kb on + strand at 1104.560 kb on - strand at 1104.750 kb on - strand, within ABZR87_RS21040 at 1105.004 kb on + strand, within ABZR87_RS21040 at 1105.068 kb on - strand at 1105.101 kb on - strand at 1105.101 kb on - strand at 1105.134 kb on - strand at 1105.160 kb on + strand at 1105.160 kb on + strand at 1105.160 kb on + strand at 1105.208 kb on + strand, within ABZR87_RS21045 at 1105.286 kb on + strand, within ABZR87_RS21045 at 1105.385 kb on + strand, within ABZR87_RS21045 at 1105.386 kb on - strand, within ABZR87_RS21045 at 1105.514 kb on + strand, within ABZR87_RS21045 at 1105.514 kb on + strand, within ABZR87_RS21045 at 1105.515 kb on - strand, within ABZR87_RS21045 at 1105.802 kb on + strand, within ABZR87_RS21045 at 1105.857 kb on - strand, within ABZR87_RS21045 at 1105.871 kb on + strand, within ABZR87_RS21045 at 1105.922 kb on + strand, within ABZR87_RS21045
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 1,103,555 + ABZR87_RS21030 0.28 +0.4 1,103,555 + ABZR87_RS21030 0.28 +0.1 1,103,555 + ABZR87_RS21030 0.28 +0.5 1,103,555 + ABZR87_RS21030 0.28 -0.2 1,103,556 - ABZR87_RS21030 0.28 +0.3 1,103,556 - ABZR87_RS21030 0.28 +0.3 1,103,556 - ABZR87_RS21030 0.28 -0.0 1,103,556 - ABZR87_RS21030 0.28 +0.2 1,103,585 + ABZR87_RS21030 0.34 +0.4 1,103,585 + ABZR87_RS21030 0.34 -0.0 1,103,586 - ABZR87_RS21030 0.34 -0.4 1,103,627 - ABZR87_RS21030 0.42 -0.4 1,103,747 + ABZR87_RS21030 0.68 -0.2 1,103,747 + ABZR87_RS21030 0.68 +1.5 1,103,915 + +0.8 1,103,915 + +0.8 1,103,915 + -0.4 1,103,916 - +0.2 1,104,131 + ABZR87_RS21035 0.34 -1.3 1,104,131 + ABZR87_RS21035 0.34 +0.1 1,104,131 + ABZR87_RS21035 0.34 +0.0 1,104,132 - ABZR87_RS21035 0.34 -0.8 1,104,132 - ABZR87_RS21035 0.34 +0.6 1,104,132 - ABZR87_RS21035 0.34 -0.1 1,104,132 - ABZR87_RS21035 0.34 +0.2 1,104,152 + ABZR87_RS21035 0.38 +0.5 1,104,153 - ABZR87_RS21035 0.38 -1.3 1,104,153 - ABZR87_RS21035 0.38 -2.1 1,104,266 + ABZR87_RS21035 0.56 +0.2 1,104,266 + ABZR87_RS21035 0.56 -0.8 1,104,266 + ABZR87_RS21035 0.56 -1.4 1,104,267 - ABZR87_RS21035 0.56 -1.8 1,104,267 - ABZR87_RS21035 0.56 -0.7 1,104,267 - ABZR87_RS21035 0.56 -0.7 1,104,267 - ABZR87_RS21035 0.56 -0.1 1,104,267 - ABZR87_RS21035 0.56 -0.7 1,104,312 - ABZR87_RS21035 0.63 +0.5 1,104,342 - ABZR87_RS21035 0.68 -0.7 1,104,362 + ABZR87_RS21035 0.71 -1.4 1,104,362 + ABZR87_RS21035 0.71 -0.7 1,104,362 + ABZR87_RS21035 0.71 -0.4 1,104,362 + ABZR87_RS21035 0.71 +0.4 1,104,362 + ABZR87_RS21035 0.71 +0.3 1,104,362 + ABZR87_RS21035 0.71 -0.4 1,104,362 + ABZR87_RS21035 0.71 +1.0 1,104,363 - ABZR87_RS21035 0.71 -0.3 1,104,363 - ABZR87_RS21035 0.71 +1.7 1,104,377 + ABZR87_RS21035 0.73 +0.6 1,104,378 - ABZR87_RS21035 0.73 +0.2 1,104,559 + +0.3 1,104,560 - +1.4 1,104,750 - ABZR87_RS21040 0.40 -1.1 1,105,004 + ABZR87_RS21040 0.88 -1.0 1,105,068 - +0.3 1,105,101 - -1.7 1,105,101 - -0.4 1,105,134 - -0.7 1,105,160 + -1.2 1,105,160 + +0.2 1,105,160 + -0.4 1,105,208 + ABZR87_RS21045 0.12 -0.0 1,105,286 + ABZR87_RS21045 0.19 -0.4 1,105,385 + ABZR87_RS21045 0.28 -1.2 1,105,386 - ABZR87_RS21045 0.28 -0.0 1,105,514 + ABZR87_RS21045 0.39 +2.6 1,105,514 + ABZR87_RS21045 0.39 -1.1 1,105,515 - ABZR87_RS21045 0.39 -0.5 1,105,802 + ABZR87_RS21045 0.65 -1.1 1,105,857 - ABZR87_RS21045 0.70 -1.3 1,105,871 + ABZR87_RS21045 0.72 +0.4 1,105,922 + ABZR87_RS21045 0.76 +0.6
Or see this region's nucleotide sequence