Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20350 and ABZR87_RS20355 are separated by 55 nucleotides ABZR87_RS20355 and ABZR87_RS20360 overlap by 4 nucleotides ABZR87_RS20360 and ABZR87_RS20365 are separated by 25 nucleotides
ABZR87_RS20350: ABZR87_RS20350 - LysR substrate-binding domain-containing protein, at 955,014 to 955,910
_RS20350
ABZR87_RS20355: ABZR87_RS20355 - hypothetical protein, at 955,966 to 956,331
_RS20355
ABZR87_RS20360: ABZR87_RS20360 - ABC transporter substrate-binding protein, at 956,328 to 957,269
_RS20360
ABZR87_RS20365: ABZR87_RS20365 - cytochrome c, at 957,295 to 958,461
_RS20365
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.596 kb on + strand, within ABZR87_RS20350 at 955.596 kb on + strand, within ABZR87_RS20350 at 955.596 kb on + strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.618 kb on - strand, within ABZR87_RS20350 at 955.618 kb on - strand, within ABZR87_RS20350 at 955.681 kb on - strand, within ABZR87_RS20350 at 955.782 kb on + strand, within ABZR87_RS20350 at 955.783 kb on - strand, within ABZR87_RS20350 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.555 kb on - strand, within ABZR87_RS20360 at 956.644 kb on + strand, within ABZR87_RS20360 at 956.644 kb on + strand, within ABZR87_RS20360 at 956.645 kb on - strand, within ABZR87_RS20360 at 956.645 kb on - strand, within ABZR87_RS20360 at 956.720 kb on - strand, within ABZR87_RS20360 at 956.877 kb on - strand, within ABZR87_RS20360 at 957.109 kb on + strand, within ABZR87_RS20360 at 957.110 kb on - strand, within ABZR87_RS20360 at 957.110 kb on - strand, within ABZR87_RS20360 at 957.320 kb on + strand at 957.320 kb on + strand at 957.320 kb on + strand at 957.321 kb on - strand at 957.321 kb on - strand at 958.052 kb on + strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 955,596 + ABZR87_RS20350 0.65 +1.0 955,596 + ABZR87_RS20350 0.65 +1.5 955,596 + ABZR87_RS20350 0.65 +1.1 955,597 - ABZR87_RS20350 0.65 +1.9 955,597 - ABZR87_RS20350 0.65 +0.3 955,597 - ABZR87_RS20350 0.65 -0.8 955,597 - ABZR87_RS20350 0.65 +0.5 955,618 - ABZR87_RS20350 0.67 -0.4 955,618 - ABZR87_RS20350 0.67 -0.6 955,681 - ABZR87_RS20350 0.74 -0.2 955,782 + ABZR87_RS20350 0.86 -2.1 955,783 - ABZR87_RS20350 0.86 +0.0 956,554 + ABZR87_RS20360 0.24 +0.9 956,554 + ABZR87_RS20360 0.24 -0.0 956,554 + ABZR87_RS20360 0.24 -0.9 956,554 + ABZR87_RS20360 0.24 -1.6 956,555 - ABZR87_RS20360 0.24 -0.6 956,644 + ABZR87_RS20360 0.34 -0.1 956,644 + ABZR87_RS20360 0.34 -0.7 956,645 - ABZR87_RS20360 0.34 +0.8 956,645 - ABZR87_RS20360 0.34 +0.3 956,720 - ABZR87_RS20360 0.42 -1.3 956,877 - ABZR87_RS20360 0.58 -0.1 957,109 + ABZR87_RS20360 0.83 +0.2 957,110 - ABZR87_RS20360 0.83 -0.7 957,110 - ABZR87_RS20360 0.83 +0.2 957,320 + -0.4 957,320 + +0.3 957,320 + -0.5 957,321 - +0.5 957,321 - -0.2 958,052 + ABZR87_RS20365 0.65 -0.1 958,053 - ABZR87_RS20365 0.65 +0.0 958,053 - ABZR87_RS20365 0.65 +0.0 958,053 - ABZR87_RS20365 0.65 +0.6
Or see this region's nucleotide sequence