Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20010

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20000 and ABZR87_RS20005 are separated by 37 nucleotidesABZR87_RS20005 and ABZR87_RS20010 are separated by 25 nucleotidesABZR87_RS20010 and ABZR87_RS20015 are separated by 4 nucleotidesABZR87_RS20015 and ABZR87_RS20020 are separated by 42 nucleotides ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247 _RS20000 ABZR87_RS20005: ABZR87_RS20005 - hypothetical protein, at 866,285 to 866,926 _RS20005 ABZR87_RS20010: ABZR87_RS20010 - DeoR family transcriptional regulator, at 866,952 to 867,635 _RS20010 ABZR87_RS20015: ABZR87_RS20015 - phosphoribosyltransferase family protein, at 867,640 to 868,290 _RS20015 ABZR87_RS20020: ABZR87_RS20020 - magnesium-translocating P-type ATPase, at 868,333 to 870,939 _RS20020 Position (kb) 866 867 868Strain fitness (log2 ratio) -2 -1 0 1 2at 866.040 kb on - strand, within ABZR87_RS20000at 866.146 kb on - strandat 866.245 kb on + strandat 866.245 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.277 kb on + strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.278 kb on - strandat 866.341 kb on + strandat 866.341 kb on + strandat 866.341 kb on + strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.342 kb on - strandat 866.351 kb on + strand, within ABZR87_RS20005at 866.351 kb on + strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.352 kb on - strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.368 kb on + strand, within ABZR87_RS20005at 866.369 kb on - strand, within ABZR87_RS20005at 866.455 kb on + strand, within ABZR87_RS20005at 866.455 kb on + strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.456 kb on - strand, within ABZR87_RS20005at 866.628 kb on + strand, within ABZR87_RS20005at 866.629 kb on - strand, within ABZR87_RS20005at 866.705 kb on - strand, within ABZR87_RS20005at 866.726 kb on + strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.727 kb on - strand, within ABZR87_RS20005at 866.938 kb on - strandat 866.938 kb on - strandat 867.099 kb on + strand, within ABZR87_RS20010at 867.100 kb on - strand, within ABZR87_RS20010at 867.100 kb on - strand, within ABZR87_RS20010at 867.221 kb on + strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.222 kb on - strand, within ABZR87_RS20010at 867.276 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.339 kb on + strand, within ABZR87_RS20010at 867.340 kb on - strand, within ABZR87_RS20010at 867.633 kb on + strandat 867.633 kb on + strandat 867.698 kb on - strandat 867.698 kb on - strandat 867.868 kb on + strand, within ABZR87_RS20015at 867.869 kb on - strand, within ABZR87_RS20015at 867.869 kb on - strand, within ABZR87_RS20015at 867.880 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.903 kb on + strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.904 kb on - strand, within ABZR87_RS20015at 867.910 kb on + strand, within ABZR87_RS20015at 867.910 kb on + strand, within ABZR87_RS20015at 867.910 kb on + strand, within ABZR87_RS20015at 867.911 kb on - strand, within ABZR87_RS20015at 867.941 kb on - strand, within ABZR87_RS20015at 867.967 kb on + strand, within ABZR87_RS20015at 867.967 kb on + strand, within ABZR87_RS20015at 867.968 kb on - strand, within ABZR87_RS20015at 867.968 kb on - strand, within ABZR87_RS20015at 867.968 kb on - strand, within ABZR87_RS20015at 867.968 kb on - strand, within ABZR87_RS20015at 867.969 kb on + strand, within ABZR87_RS20015at 867.969 kb on + strand, within ABZR87_RS20015at 867.988 kb on + strand, within ABZR87_RS20015at 867.988 kb on + strand, within ABZR87_RS20015at 867.989 kb on - strand, within ABZR87_RS20015at 868.172 kb on - strand, within ABZR87_RS20015at 868.200 kb on + strand, within ABZR87_RS20015at 868.200 kb on + strand, within ABZR87_RS20015at 868.200 kb on + strand, within ABZR87_RS20015at 868.200 kb on + strand, within ABZR87_RS20015at 868.200 kb on + strand, within ABZR87_RS20015at 868.200 kb on + strand, within ABZR87_RS20015at 868.201 kb on - strand, within ABZR87_RS20015at 868.201 kb on - strand, within ABZR87_RS20015at 868.201 kb on - strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.204 kb on + strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.205 kb on - strand, within ABZR87_RS20015at 868.207 kb on + strand, within ABZR87_RS20015at 868.207 kb on + strand, within ABZR87_RS20015at 868.208 kb on - strand, within ABZR87_RS20015at 868.346 kb on + strandat 868.346 kb on + strandat 868.346 kb on + strandat 868.347 kb on - strandat 868.347 kb on - strandat 868.358 kb on + strandat 868.358 kb on + strandat 868.358 kb on + strandat 868.359 kb on - strandat 868.359 kb on - strandat 868.376 kb on + strandat 868.391 kb on + strandat 868.392 kb on - strandat 868.392 kb on - strandat 868.392 kb on - strandat 868.424 kb on + strandat 868.425 kb on - strandat 868.527 kb on + strandat 868.572 kb on + strandat 868.572 kb on + strandat 868.572 kb on + strandat 868.572 kb on + strandat 868.573 kb on - strandat 868.573 kb on - strandat 868.573 kb on - strandat 868.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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866,040 - ABZR87_RS20000 0.87 +0.1
866,146 - -2.0
866,245 + +0.6
866,245 + -0.2
866,277 + -0.6
866,277 + +0.1
866,277 + -0.7
866,277 + -0.2
866,277 + -0.1
866,277 + +0.1
866,277 + -0.4
866,277 + -0.2
866,277 + +0.4
866,278 - -0.3
866,278 - -0.2
866,278 - +1.1
866,278 - -1.8
866,278 - -0.3
866,341 + +0.8
866,341 + +0.1
866,341 + -0.2
866,342 - -0.6
866,342 - +0.2
866,342 - +2.1
866,342 - +0.4
866,351 + ABZR87_RS20005 0.10 -0.3
866,351 + ABZR87_RS20005 0.10 -0.0
866,352 - ABZR87_RS20005 0.10 -0.1
866,352 - ABZR87_RS20005 0.10 +1.4
866,352 - ABZR87_RS20005 0.10 -0.1
866,368 + ABZR87_RS20005 0.13 -0.1
866,368 + ABZR87_RS20005 0.13 +0.1
866,368 + ABZR87_RS20005 0.13 -1.6
866,369 - ABZR87_RS20005 0.13 -0.4
866,455 + ABZR87_RS20005 0.26 -0.8
866,455 + ABZR87_RS20005 0.26 -0.0
866,456 - ABZR87_RS20005 0.27 -0.1
866,456 - ABZR87_RS20005 0.27 -0.7
866,456 - ABZR87_RS20005 0.27 -0.5
866,628 + ABZR87_RS20005 0.53 -0.5
866,629 - ABZR87_RS20005 0.54 +0.3
866,705 - ABZR87_RS20005 0.65 +0.1
866,726 + ABZR87_RS20005 0.69 -0.7
866,727 - ABZR87_RS20005 0.69 -0.2
866,727 - ABZR87_RS20005 0.69 +1.1
866,727 - ABZR87_RS20005 0.69 +0.3
866,727 - ABZR87_RS20005 0.69 +0.3
866,727 - ABZR87_RS20005 0.69 +0.7
866,938 - -0.3
866,938 - -1.1
867,099 + ABZR87_RS20010 0.21 -0.7
867,100 - ABZR87_RS20010 0.22 +1.1
867,100 - ABZR87_RS20010 0.22 +0.0
867,221 + ABZR87_RS20010 0.39 -0.4
867,222 - ABZR87_RS20010 0.39 +0.1
867,222 - ABZR87_RS20010 0.39 +0.8
867,222 - ABZR87_RS20010 0.39 -0.8
867,222 - ABZR87_RS20010 0.39 +0.7
867,276 + ABZR87_RS20010 0.47 -0.0
867,339 + ABZR87_RS20010 0.57 -0.2
867,339 + ABZR87_RS20010 0.57 -0.8
867,339 + ABZR87_RS20010 0.57 -0.7
867,339 + ABZR87_RS20010 0.57 -0.4
867,340 - ABZR87_RS20010 0.57 -0.2
867,633 + +0.2
867,633 + -0.2
867,698 - +0.7
867,698 - -0.4
867,868 + ABZR87_RS20015 0.35 -0.4
867,869 - ABZR87_RS20015 0.35 -0.3
867,869 - ABZR87_RS20015 0.35 +0.1
867,880 + ABZR87_RS20015 0.37 -2.2
867,903 + ABZR87_RS20015 0.40 -0.3
867,903 + ABZR87_RS20015 0.40 +0.3
867,903 + ABZR87_RS20015 0.40 -0.7
867,903 + ABZR87_RS20015 0.40 -0.0
867,904 - ABZR87_RS20015 0.41 -0.5
867,904 - ABZR87_RS20015 0.41 -1.1
867,904 - ABZR87_RS20015 0.41 -0.6
867,904 - ABZR87_RS20015 0.41 +0.2
867,910 + ABZR87_RS20015 0.41 -1.1
867,910 + ABZR87_RS20015 0.41 +1.1
867,910 + ABZR87_RS20015 0.41 +0.3
867,911 - ABZR87_RS20015 0.42 -0.3
867,941 - ABZR87_RS20015 0.46 +0.8
867,967 + ABZR87_RS20015 0.50 -0.3
867,967 + ABZR87_RS20015 0.50 +0.0
867,968 - ABZR87_RS20015 0.50 -0.5
867,968 - ABZR87_RS20015 0.50 -0.2
867,968 - ABZR87_RS20015 0.50 +0.3
867,968 - ABZR87_RS20015 0.50 -0.4
867,969 + ABZR87_RS20015 0.51 -0.2
867,969 + ABZR87_RS20015 0.51 +0.8
867,988 + ABZR87_RS20015 0.53 -0.5
867,988 + ABZR87_RS20015 0.53 -2.0
867,989 - ABZR87_RS20015 0.54 +0.1
868,172 - ABZR87_RS20015 0.82 -0.7
868,200 + ABZR87_RS20015 0.86 +0.3
868,200 + ABZR87_RS20015 0.86 -0.3
868,200 + ABZR87_RS20015 0.86 +0.2
868,200 + ABZR87_RS20015 0.86 -0.3
868,200 + ABZR87_RS20015 0.86 +0.1
868,200 + ABZR87_RS20015 0.86 +0.8
868,201 - ABZR87_RS20015 0.86 -0.4
868,201 - ABZR87_RS20015 0.86 -0.6
868,201 - ABZR87_RS20015 0.86 +0.4
868,204 + ABZR87_RS20015 0.87 -0.5
868,204 + ABZR87_RS20015 0.87 -0.9
868,204 + ABZR87_RS20015 0.87 +0.3
868,204 + ABZR87_RS20015 0.87 -0.8
868,204 + ABZR87_RS20015 0.87 -0.4
868,204 + ABZR87_RS20015 0.87 -0.4
868,204 + ABZR87_RS20015 0.87 -0.3
868,204 + ABZR87_RS20015 0.87 +0.2
868,204 + ABZR87_RS20015 0.87 +0.5
868,204 + ABZR87_RS20015 0.87 +2.1
868,205 - ABZR87_RS20015 0.87 +0.9
868,205 - ABZR87_RS20015 0.87 -1.2
868,205 - ABZR87_RS20015 0.87 -0.9
868,205 - ABZR87_RS20015 0.87 -0.9
868,205 - ABZR87_RS20015 0.87 +0.4
868,205 - ABZR87_RS20015 0.87 +0.1
868,205 - ABZR87_RS20015 0.87 -0.4
868,205 - ABZR87_RS20015 0.87 -0.6
868,205 - ABZR87_RS20015 0.87 +0.4
868,205 - ABZR87_RS20015 0.87 +0.6
868,207 + ABZR87_RS20015 0.87 +0.5
868,207 + ABZR87_RS20015 0.87 -0.1
868,208 - ABZR87_RS20015 0.87 -0.1
868,346 + +0.1
868,346 + +0.0
868,346 + -1.5
868,347 - -0.3
868,347 - -1.4
868,358 + -0.9
868,358 + -0.3
868,358 + +0.2
868,359 - -0.4
868,359 - +0.4
868,376 + -0.3
868,391 + -0.7
868,392 - +0.3
868,392 - -1.8
868,392 - +0.4
868,424 + -0.8
868,425 - +0.1
868,527 + +0.7
868,572 + -0.4
868,572 + +0.3
868,572 + +0.8
868,572 + +0.3
868,573 - -0.5
868,573 - -1.6
868,573 - +0.3
868,573 - +0.5

Or see this region's nucleotide sequence