Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19985

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19975 and ABZR87_RS19980 are separated by 10 nucleotidesABZR87_RS19980 and ABZR87_RS19985 are separated by 29 nucleotidesABZR87_RS19985 and ABZR87_RS19990 overlap by 4 nucleotides ABZR87_RS19975: ABZR87_RS19975 - thymidine phosphorylase family protein, at 859,856 to 861,403 _RS19975 ABZR87_RS19980: ABZR87_RS19980 - DUF1488 domain-containing protein, at 861,414 to 861,692 _RS19980 ABZR87_RS19985: ABZR87_RS19985 - ribose-phosphate pyrophosphokinase, at 861,722 to 862,663 _RS19985 ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024 _RS19990 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1at 860.977 kb on + strand, within ABZR87_RS19975at 860.978 kb on - strand, within ABZR87_RS19975at 860.991 kb on + strand, within ABZR87_RS19975at 861.054 kb on + strand, within ABZR87_RS19975at 861.055 kb on - strand, within ABZR87_RS19975at 861.300 kb on + strandat 861.300 kb on + strandat 861.300 kb on + strandat 861.300 kb on + strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.301 kb on - strandat 861.322 kb on + strandat 861.322 kb on + strandat 861.322 kb on + strandat 861.322 kb on + strandat 861.322 kb on + strandat 861.323 kb on - strandat 861.323 kb on - strandat 861.323 kb on - strandat 861.323 kb on - strandat 861.323 kb on - strandat 861.323 kb on - strandat 861.323 kb on - strandat 861.410 kb on + strandat 861.410 kb on + strandat 861.410 kb on + strandat 861.411 kb on - strandat 861.411 kb on - strandat 861.411 kb on - strandat 861.411 kb on - strandat 861.411 kb on - strandat 861.411 kb on - strandat 861.411 kb on - strandat 861.596 kb on - strand, within ABZR87_RS19980at 861.656 kb on - strand, within ABZR87_RS19980at 861.707 kb on - strandat 861.707 kb on - strandat 861.707 kb on - strandat 861.756 kb on - strandat 861.756 kb on - strandat 861.873 kb on + strand, within ABZR87_RS19985at 861.873 kb on + strand, within ABZR87_RS19985at 861.873 kb on + strand, within ABZR87_RS19985at 861.874 kb on - strand, within ABZR87_RS19985at 861.906 kb on - strand, within ABZR87_RS19985at 861.906 kb on - strand, within ABZR87_RS19985at 862.001 kb on + strand, within ABZR87_RS19985at 862.001 kb on + strand, within ABZR87_RS19985at 862.001 kb on + strand, within ABZR87_RS19985at 862.002 kb on - strand, within ABZR87_RS19985at 862.002 kb on - strand, within ABZR87_RS19985at 862.002 kb on - strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.006 kb on - strand, within ABZR87_RS19985at 862.006 kb on - strand, within ABZR87_RS19985at 862.033 kb on + strand, within ABZR87_RS19985at 862.033 kb on + strand, within ABZR87_RS19985at 862.034 kb on - strand, within ABZR87_RS19985at 862.034 kb on - strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.161 kb on - strand, within ABZR87_RS19985at 862.161 kb on - strand, within ABZR87_RS19985at 862.224 kb on + strand, within ABZR87_RS19985at 862.224 kb on + strand, within ABZR87_RS19985at 862.224 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.372 kb on - strand, within ABZR87_RS19985at 862.506 kb on + strand, within ABZR87_RS19985at 862.506 kb on + strand, within ABZR87_RS19985at 862.507 kb on - strand, within ABZR87_RS19985at 862.507 kb on - strand, within ABZR87_RS19985at 862.518 kb on + strand, within ABZR87_RS19985at 862.518 kb on + strand, within ABZR87_RS19985at 862.519 kb on - strand, within ABZR87_RS19985at 862.519 kb on - strand, within ABZR87_RS19985at 862.679 kb on + strandat 862.679 kb on + strandat 862.692 kb on - strandat 862.692 kb on - strandat 862.800 kb on + strand, within ABZR87_RS19990at 863.154 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.220 kb on - strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.270 kb on + strand, within ABZR87_RS19990at 863.270 kb on + strand, within ABZR87_RS19990at 863.286 kb on + strand, within ABZR87_RS19990at 863.287 kb on - strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.400 kb on - strand, within ABZR87_RS19990at 863.400 kb on - strand, within ABZR87_RS19990at 863.601 kb on - strand, within ABZR87_RS19990at 863.623 kb on + strand, within ABZR87_RS19990at 863.624 kb on - strand, within ABZR87_RS19990at 863.624 kb on - strand, within ABZR87_RS19990at 863.652 kb on - strand, within ABZR87_RS19990

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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860,977 + ABZR87_RS19975 0.72 +0.5
860,978 - ABZR87_RS19975 0.72 +0.0
860,991 + ABZR87_RS19975 0.73 +0.9
861,054 + ABZR87_RS19975 0.77 -0.1
861,055 - ABZR87_RS19975 0.77 -0.8
861,300 + +0.3
861,300 + -0.3
861,300 + +1.0
861,300 + +0.1
861,301 - -0.5
861,301 - +1.1
861,301 - +0.2
861,301 - -0.1
861,301 - -3.3
861,301 - -0.4
861,301 - +0.1
861,301 - +0.1
861,301 - +0.1
861,322 + -0.5
861,322 + +0.9
861,322 + +0.3
861,322 + +0.4
861,322 + -0.3
861,323 - +0.3
861,323 - +1.0
861,323 - -0.5
861,323 - +0.4
861,323 - +0.1
861,323 - -0.7
861,323 - +0.3
861,410 + +0.1
861,410 + -0.2
861,410 + +0.2
861,411 - +0.1
861,411 - +0.0
861,411 - +0.5
861,411 - +0.1
861,411 - -0.7
861,411 - -0.0
861,411 - +0.1
861,596 - ABZR87_RS19980 0.65 +0.5
861,656 - ABZR87_RS19980 0.87 +0.4
861,707 - +0.2
861,707 - +0.4
861,707 - -1.8
861,756 - -0.3
861,756 - +0.4
861,873 + ABZR87_RS19985 0.16 -0.2
861,873 + ABZR87_RS19985 0.16 +0.5
861,873 + ABZR87_RS19985 0.16 -0.1
861,874 - ABZR87_RS19985 0.16 +0.0
861,906 - ABZR87_RS19985 0.20 +0.1
861,906 - ABZR87_RS19985 0.20 -0.5
862,001 + ABZR87_RS19985 0.30 -1.4
862,001 + ABZR87_RS19985 0.30 -0.3
862,001 + ABZR87_RS19985 0.30 -0.6
862,002 - ABZR87_RS19985 0.30 -1.1
862,002 - ABZR87_RS19985 0.30 -0.7
862,002 - ABZR87_RS19985 0.30 -0.8
862,005 + ABZR87_RS19985 0.30 -0.6
862,005 + ABZR87_RS19985 0.30 +0.1
862,005 + ABZR87_RS19985 0.30 -2.0
862,005 + ABZR87_RS19985 0.30 -0.5
862,005 + ABZR87_RS19985 0.30 -1.2
862,006 - ABZR87_RS19985 0.30 -0.5
862,006 - ABZR87_RS19985 0.30 +0.1
862,033 + ABZR87_RS19985 0.33 -0.2
862,033 + ABZR87_RS19985 0.33 +0.4
862,034 - ABZR87_RS19985 0.33 -1.0
862,034 - ABZR87_RS19985 0.33 -1.2
862,160 + ABZR87_RS19985 0.46 -0.5
862,160 + ABZR87_RS19985 0.46 +0.1
862,160 + ABZR87_RS19985 0.46 +0.1
862,160 + ABZR87_RS19985 0.46 -1.2
862,160 + ABZR87_RS19985 0.46 -0.8
862,160 + ABZR87_RS19985 0.46 -1.4
862,160 + ABZR87_RS19985 0.46 +1.1
862,161 - ABZR87_RS19985 0.47 -0.7
862,161 - ABZR87_RS19985 0.47 -1.4
862,224 + ABZR87_RS19985 0.53 +0.1
862,224 + ABZR87_RS19985 0.53 -0.3
862,224 + ABZR87_RS19985 0.53 -0.9
862,360 + ABZR87_RS19985 0.68 -1.0
862,360 + ABZR87_RS19985 0.68 -2.0
862,360 + ABZR87_RS19985 0.68 -0.4
862,360 + ABZR87_RS19985 0.68 +1.7
862,360 + ABZR87_RS19985 0.68 +0.7
862,361 - ABZR87_RS19985 0.68 -1.5
862,361 - ABZR87_RS19985 0.68 +0.1
862,361 - ABZR87_RS19985 0.68 +0.1
862,361 - ABZR87_RS19985 0.68 +0.5
862,361 - ABZR87_RS19985 0.68 +0.9
862,362 + ABZR87_RS19985 0.68 -1.2
862,362 + ABZR87_RS19985 0.68 -0.4
862,362 + ABZR87_RS19985 0.68 -0.3
862,362 + ABZR87_RS19985 0.68 -0.2
862,362 + ABZR87_RS19985 0.68 -0.6
862,362 + ABZR87_RS19985 0.68 -0.1
862,362 + ABZR87_RS19985 0.68 -2.2
862,363 - ABZR87_RS19985 0.68 -0.2
862,363 - ABZR87_RS19985 0.68 -0.3
862,363 - ABZR87_RS19985 0.68 -1.0
862,363 - ABZR87_RS19985 0.68 +0.2
862,363 - ABZR87_RS19985 0.68 -0.7
862,363 - ABZR87_RS19985 0.68 +0.0
862,363 - ABZR87_RS19985 0.68 -1.0
862,372 - ABZR87_RS19985 0.69 -0.1
862,506 + ABZR87_RS19985 0.83 -0.7
862,506 + ABZR87_RS19985 0.83 -0.3
862,507 - ABZR87_RS19985 0.83 -0.4
862,507 - ABZR87_RS19985 0.83 -1.5
862,518 + ABZR87_RS19985 0.85 -0.1
862,518 + ABZR87_RS19985 0.85 -0.4
862,519 - ABZR87_RS19985 0.85 +0.6
862,519 - ABZR87_RS19985 0.85 +0.1
862,679 + -0.8
862,679 + +0.3
862,692 - +1.0
862,692 - -0.5
862,800 + ABZR87_RS19990 0.10 -0.2
863,154 + ABZR87_RS19990 0.36 -0.4
863,219 + ABZR87_RS19990 0.41 +0.4
863,219 + ABZR87_RS19990 0.41 +0.7
863,219 + ABZR87_RS19990 0.41 -0.3
863,219 + ABZR87_RS19990 0.41 +0.1
863,219 + ABZR87_RS19990 0.41 +1.0
863,220 - ABZR87_RS19990 0.41 -0.6
863,261 + ABZR87_RS19990 0.44 -0.8
863,261 + ABZR87_RS19990 0.44 -0.1
863,261 + ABZR87_RS19990 0.44 +1.5
863,261 + ABZR87_RS19990 0.44 -0.3
863,262 - ABZR87_RS19990 0.44 -0.4
863,262 - ABZR87_RS19990 0.44 +0.5
863,262 - ABZR87_RS19990 0.44 -0.5
863,262 - ABZR87_RS19990 0.44 +0.6
863,262 - ABZR87_RS19990 0.44 -0.9
863,270 + ABZR87_RS19990 0.45 -0.5
863,270 + ABZR87_RS19990 0.45 -0.5
863,286 + ABZR87_RS19990 0.46 +0.2
863,287 - ABZR87_RS19990 0.46 -0.3
863,399 + ABZR87_RS19990 0.54 -2.3
863,399 + ABZR87_RS19990 0.54 -1.7
863,399 + ABZR87_RS19990 0.54 -0.6
863,399 + ABZR87_RS19990 0.54 -1.0
863,400 - ABZR87_RS19990 0.54 -0.4
863,400 - ABZR87_RS19990 0.54 +0.5
863,601 - ABZR87_RS19990 0.69 +0.1
863,623 + ABZR87_RS19990 0.71 -0.3
863,624 - ABZR87_RS19990 0.71 -0.6
863,624 - ABZR87_RS19990 0.71 -1.0
863,652 - ABZR87_RS19990 0.73 +0.0

Or see this region's nucleotide sequence