Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19915 and ABZR87_RS19920 are separated by 353 nucleotides ABZR87_RS19920 and ABZR87_RS19925 overlap by 4 nucleotides ABZR87_RS19925 and ABZR87_RS19930 are separated by 51 nucleotides
ABZR87_RS19915: ABZR87_RS19915 - acetate/propionate family kinase, at 844,832 to 846,013
_RS19915
ABZR87_RS19920: ABZR87_RS19920 - hypothetical protein, at 846,367 to 846,948
_RS19920
ABZR87_RS19925: ABZR87_RS19925 - hypothetical protein, at 846,945 to 847,631
_RS19925
ABZR87_RS19930: ABZR87_RS19930 - PAS domain-containing sensor histidine kinase, at 847,683 to 849,251
_RS19930
Position (kb) 846
847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 845.378 kb on + strand, within ABZR87_RS19915 at 845.379 kb on - strand, within ABZR87_RS19915 at 845.384 kb on + strand, within ABZR87_RS19915 at 845.384 kb on + strand, within ABZR87_RS19915 at 845.384 kb on + strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.385 kb on - strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.579 kb on + strand, within ABZR87_RS19915 at 845.580 kb on - strand, within ABZR87_RS19915 at 845.580 kb on - strand, within ABZR87_RS19915 at 845.580 kb on - strand, within ABZR87_RS19915 at 845.735 kb on + strand, within ABZR87_RS19915 at 845.735 kb on + strand, within ABZR87_RS19915 at 845.735 kb on + strand, within ABZR87_RS19915 at 845.736 kb on - strand, within ABZR87_RS19915 at 845.779 kb on - strand, within ABZR87_RS19915 at 845.867 kb on + strand, within ABZR87_RS19915 at 845.867 kb on + strand, within ABZR87_RS19915 at 845.868 kb on - strand, within ABZR87_RS19915 at 846.119 kb on + strand at 846.145 kb on + strand at 846.145 kb on + strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.146 kb on - strand at 846.170 kb on + strand at 846.170 kb on + strand at 846.180 kb on + strand at 846.181 kb on - strand at 846.242 kb on + strand at 846.242 kb on + strand at 846.242 kb on + strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.243 kb on - strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.246 kb on + strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.247 kb on - strand at 846.288 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.289 kb on + strand at 846.290 kb on - strand at 846.290 kb on - strand at 846.290 kb on - strand at 846.291 kb on + strand at 846.291 kb on + strand at 846.291 kb on + strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.292 kb on - strand at 846.309 kb on + strand at 846.310 kb on - strand at 846.384 kb on - strand at 846.598 kb on + strand, within ABZR87_RS19920 at 846.599 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.631 kb on - strand, within ABZR87_RS19920 at 846.697 kb on + strand, within ABZR87_RS19920 at 846.698 kb on - strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.785 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.847 kb on + strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.848 kb on - strand, within ABZR87_RS19920 at 846.909 kb on + strand at 846.909 kb on + strand at 846.909 kb on + strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.910 kb on - strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.913 kb on + strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.914 kb on - strand at 846.925 kb on - strand at 846.972 kb on + strand at 846.972 kb on + strand at 846.973 kb on - strand at 847.266 kb on + strand, within ABZR87_RS19925 at 847.266 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.272 kb on + strand, within ABZR87_RS19925 at 847.273 kb on - strand, within ABZR87_RS19925 at 847.301 kb on + strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.302 kb on - strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.375 kb on + strand, within ABZR87_RS19925 at 847.376 kb on - strand, within ABZR87_RS19925 at 847.384 kb on - strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.394 kb on + strand, within ABZR87_RS19925 at 847.460 kb on + strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.461 kb on - strand, within ABZR87_RS19925 at 847.551 kb on + strand, within ABZR87_RS19925 at 847.552 kb on - strand, within ABZR87_RS19925 at 847.584 kb on + strand at 847.585 kb on - strand at 847.585 kb on - strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.611 kb on + strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.612 kb on - strand at 847.638 kb on + strand at 847.639 kb on - strand at 847.695 kb on + strand at 847.695 kb on + strand at 847.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 845,378 + ABZR87_RS19915 0.46 -0.1 845,379 - ABZR87_RS19915 0.46 +0.1 845,384 + ABZR87_RS19915 0.47 -0.5 845,384 + ABZR87_RS19915 0.47 +0.0 845,384 + ABZR87_RS19915 0.47 +0.6 845,385 - ABZR87_RS19915 0.47 -0.3 845,385 - ABZR87_RS19915 0.47 +1.3 845,385 - ABZR87_RS19915 0.47 -0.1 845,385 - ABZR87_RS19915 0.47 -0.7 845,385 - ABZR87_RS19915 0.47 +0.1 845,385 - ABZR87_RS19915 0.47 +0.9 845,385 - ABZR87_RS19915 0.47 -0.1 845,579 + ABZR87_RS19915 0.63 +0.2 845,579 + ABZR87_RS19915 0.63 -0.9 845,579 + ABZR87_RS19915 0.63 +0.7 845,579 + ABZR87_RS19915 0.63 -0.3 845,579 + ABZR87_RS19915 0.63 -0.8 845,579 + ABZR87_RS19915 0.63 +0.0 845,579 + ABZR87_RS19915 0.63 -0.5 845,579 + ABZR87_RS19915 0.63 +0.2 845,579 + ABZR87_RS19915 0.63 +1.2 845,579 + ABZR87_RS19915 0.63 -0.0 845,579 + ABZR87_RS19915 0.63 -0.2 845,580 - ABZR87_RS19915 0.63 -0.4 845,580 - ABZR87_RS19915 0.63 -0.8 845,580 - ABZR87_RS19915 0.63 -0.0 845,735 + ABZR87_RS19915 0.76 +0.6 845,735 + ABZR87_RS19915 0.76 -0.1 845,735 + ABZR87_RS19915 0.76 +1.0 845,736 - ABZR87_RS19915 0.76 -0.3 845,779 - ABZR87_RS19915 0.80 -0.3 845,867 + ABZR87_RS19915 0.88 +0.1 845,867 + ABZR87_RS19915 0.88 +1.0 845,868 - ABZR87_RS19915 0.88 -0.8 846,119 + -0.6 846,145 + -0.1 846,145 + +0.1 846,146 - -0.8 846,146 - -0.7 846,146 - +0.3 846,146 - -0.3 846,170 + +0.4 846,170 + +0.3 846,180 + +0.6 846,181 - +0.5 846,242 + +0.6 846,242 + -0.5 846,242 + -0.1 846,243 - -0.2 846,243 - -1.0 846,243 - +0.0 846,243 - +0.6 846,243 - +0.3 846,243 - +0.3 846,243 - +0.1 846,243 - -0.4 846,246 + +1.4 846,246 + +0.5 846,246 + +0.5 846,246 + +0.9 846,246 + +0.6 846,246 + +0.6 846,246 + +0.1 846,246 + -0.1 846,246 + +0.3 846,246 + -1.6 846,246 + +0.1 846,246 + -0.2 846,246 + -1.1 846,247 - +0.3 846,247 - -1.4 846,247 - +0.4 846,247 - +0.4 846,247 - +0.4 846,247 - -0.1 846,247 - -1.1 846,247 - +1.2 846,247 - -0.4 846,247 - -0.9 846,247 - -0.0 846,288 + -0.4 846,289 + +0.6 846,289 + +0.3 846,289 + -1.2 846,289 + -0.4 846,289 + +0.8 846,289 + +0.3 846,289 + +0.2 846,289 + -0.5 846,289 + -0.0 846,289 + +0.6 846,289 + -1.9 846,290 - +0.3 846,290 - -0.2 846,290 - +0.3 846,291 + -1.0 846,291 + -1.2 846,291 + +0.5 846,292 - +0.2 846,292 - -0.6 846,292 - -0.1 846,292 - -0.1 846,292 - -1.1 846,292 - -1.5 846,309 + -0.9 846,310 - -1.2 846,384 - -0.6 846,598 + ABZR87_RS19920 0.40 +0.0 846,599 - ABZR87_RS19920 0.40 +0.3 846,631 - ABZR87_RS19920 0.45 -1.1 846,631 - ABZR87_RS19920 0.45 +0.2 846,631 - ABZR87_RS19920 0.45 -0.3 846,697 + ABZR87_RS19920 0.57 +0.3 846,698 - ABZR87_RS19920 0.57 -0.9 846,785 + ABZR87_RS19920 0.72 +0.8 846,785 + ABZR87_RS19920 0.72 -0.1 846,847 + ABZR87_RS19920 0.82 -1.0 846,847 + ABZR87_RS19920 0.82 +0.9 846,848 - ABZR87_RS19920 0.83 -1.9 846,848 - ABZR87_RS19920 0.83 +2.2 846,848 - ABZR87_RS19920 0.83 +0.0 846,848 - ABZR87_RS19920 0.83 -0.7 846,909 + +0.1 846,909 + +0.6 846,909 + -0.4 846,910 - +0.1 846,910 - -0.6 846,910 - +0.2 846,910 - -0.0 846,913 + +0.0 846,913 + +0.0 846,913 + -0.6 846,913 + +0.3 846,913 + +0.1 846,914 - -1.4 846,914 - -1.1 846,914 - +1.5 846,914 - -0.9 846,925 - +0.5 846,972 + -0.6 846,972 + +0.4 846,973 - -0.7 847,266 + ABZR87_RS19925 0.47 -0.6 847,266 + ABZR87_RS19925 0.47 -2.4 847,272 + ABZR87_RS19925 0.48 -0.1 847,272 + ABZR87_RS19925 0.48 -1.0 847,273 - ABZR87_RS19925 0.48 -0.7 847,301 + ABZR87_RS19925 0.52 +0.3 847,302 - ABZR87_RS19925 0.52 +0.5 847,302 - ABZR87_RS19925 0.52 -0.7 847,375 + ABZR87_RS19925 0.63 -1.0 847,375 + ABZR87_RS19925 0.63 +0.2 847,376 - ABZR87_RS19925 0.63 +0.5 847,384 - ABZR87_RS19925 0.64 -0.7 847,394 + ABZR87_RS19925 0.65 +0.9 847,394 + ABZR87_RS19925 0.65 +0.1 847,460 + ABZR87_RS19925 0.75 -0.5 847,461 - ABZR87_RS19925 0.75 +0.2 847,461 - ABZR87_RS19925 0.75 +0.6 847,461 - ABZR87_RS19925 0.75 -0.1 847,461 - ABZR87_RS19925 0.75 +0.2 847,551 + ABZR87_RS19925 0.88 -0.9 847,552 - ABZR87_RS19925 0.88 +0.8 847,584 + +0.8 847,585 - +0.8 847,585 - +0.5 847,611 + +1.5 847,611 + -0.5 847,611 + -0.7 847,611 + -0.5 847,611 + -1.1 847,611 + -0.7 847,611 + -0.6 847,611 + +0.9 847,611 + -0.1 847,612 - +1.5 847,612 - -0.8 847,612 - +0.3 847,612 - -0.7 847,612 - +0.6 847,612 - -0.0 847,612 - +0.1 847,612 - +0.7 847,612 - -1.9 847,612 - -0.0 847,612 - -1.1 847,612 - -0.0 847,612 - +0.6 847,612 - -0.2 847,638 + -0.5 847,639 - +0.2 847,695 + -0.2 847,695 + -1.0 847,696 - +0.5
Or see this region's nucleotide sequence