Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19910

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19900 and ABZR87_RS19905 are separated by 9 nucleotidesABZR87_RS19905 and ABZR87_RS19910 are separated by 9 nucleotidesABZR87_RS19910 and ABZR87_RS19915 overlap by 4 nucleotides ABZR87_RS19900: ABZR87_RS19900 - ABC transporter permease, at 841,707 to 842,858 _RS19900 ABZR87_RS19905: ABZR87_RS19905 - hypothetical protein, at 842,868 to 843,380 _RS19905 ABZR87_RS19910: ABZR87_RS19910 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 843,390 to 844,835 _RS19910 ABZR87_RS19915: ABZR87_RS19915 - acetate/propionate family kinase, at 844,832 to 846,013 _RS19915 Position (kb) 843 844 845Strain fitness (log2 ratio) -2 -1 0 1at 842.540 kb on + strand, within ABZR87_RS19900at 842.540 kb on + strand, within ABZR87_RS19900at 842.739 kb on + strand, within ABZR87_RS19900at 842.856 kb on + strandat 842.856 kb on + strandat 842.857 kb on - strandat 842.873 kb on + strandat 842.873 kb on + strandat 842.874 kb on - strandat 842.874 kb on - strandat 842.967 kb on + strand, within ABZR87_RS19905at 842.968 kb on - strand, within ABZR87_RS19905at 843.108 kb on + strand, within ABZR87_RS19905at 843.169 kb on - strand, within ABZR87_RS19905at 843.169 kb on - strand, within ABZR87_RS19905at 843.524 kb on + strandat 843.525 kb on - strandat 843.525 kb on - strandat 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.688 kb on - strand, within ABZR87_RS19910at 843.688 kb on - strand, within ABZR87_RS19910at 843.688 kb on - strand, within ABZR87_RS19910at 843.806 kb on + strand, within ABZR87_RS19910at 843.806 kb on + strand, within ABZR87_RS19910at 843.807 kb on - strand, within ABZR87_RS19910at 843.957 kb on - strand, within ABZR87_RS19910at 844.217 kb on + strand, within ABZR87_RS19910at 844.218 kb on - strand, within ABZR87_RS19910at 844.266 kb on - strand, within ABZR87_RS19910at 844.402 kb on + strand, within ABZR87_RS19910at 844.402 kb on + strand, within ABZR87_RS19910at 844.402 kb on + strand, within ABZR87_RS19910at 844.403 kb on - strand, within ABZR87_RS19910at 844.403 kb on - strand, within ABZR87_RS19910at 844.403 kb on - strand, within ABZR87_RS19910at 844.686 kb on + strand, within ABZR87_RS19910at 844.687 kb on - strand, within ABZR87_RS19910at 844.825 kb on + strandat 844.825 kb on + strandat 844.825 kb on + strandat 844.826 kb on - strandat 844.826 kb on - strandat 845.024 kb on + strand, within ABZR87_RS19915at 845.024 kb on + strand, within ABZR87_RS19915at 845.025 kb on - strand, within ABZR87_RS19915at 845.025 kb on - strand, within ABZR87_RS19915at 845.127 kb on - strand, within ABZR87_RS19915at 845.139 kb on + strand, within ABZR87_RS19915at 845.140 kb on - strand, within ABZR87_RS19915at 845.177 kb on + strand, within ABZR87_RS19915at 845.177 kb on + strand, within ABZR87_RS19915at 845.177 kb on + strand, within ABZR87_RS19915at 845.177 kb on + strand, within ABZR87_RS19915at 845.177 kb on + strand, within ABZR87_RS19915at 845.177 kb on + strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.178 kb on - strand, within ABZR87_RS19915at 845.179 kb on + strand, within ABZR87_RS19915at 845.179 kb on + strand, within ABZR87_RS19915at 845.327 kb on + strand, within ABZR87_RS19915at 845.328 kb on - strand, within ABZR87_RS19915at 845.328 kb on - strand, within ABZR87_RS19915at 845.378 kb on + strand, within ABZR87_RS19915at 845.379 kb on - strand, within ABZR87_RS19915at 845.384 kb on + strand, within ABZR87_RS19915at 845.384 kb on + strand, within ABZR87_RS19915at 845.384 kb on + strand, within ABZR87_RS19915at 845.385 kb on - strand, within ABZR87_RS19915at 845.385 kb on - strand, within ABZR87_RS19915at 845.385 kb on - strand, within ABZR87_RS19915at 845.385 kb on - strand, within ABZR87_RS19915at 845.385 kb on - strand, within ABZR87_RS19915at 845.385 kb on - strand, within ABZR87_RS19915at 845.385 kb on - strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.579 kb on + strand, within ABZR87_RS19915at 845.580 kb on - strand, within ABZR87_RS19915at 845.580 kb on - strand, within ABZR87_RS19915at 845.580 kb on - strand, within ABZR87_RS19915at 845.735 kb on + strand, within ABZR87_RS19915at 845.735 kb on + strand, within ABZR87_RS19915at 845.735 kb on + strand, within ABZR87_RS19915at 845.736 kb on - strand, within ABZR87_RS19915at 845.779 kb on - strand, within ABZR87_RS19915

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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842,540 + ABZR87_RS19900 0.72 -0.9
842,540 + ABZR87_RS19900 0.72 +0.1
842,739 + ABZR87_RS19900 0.90 +0.4
842,856 + -0.4
842,856 + +1.1
842,857 - -0.6
842,873 + +1.1
842,873 + +0.1
842,874 - +0.1
842,874 - -0.6
842,967 + ABZR87_RS19905 0.19 -0.3
842,968 - ABZR87_RS19905 0.19 -0.3
843,108 + ABZR87_RS19905 0.47 +0.6
843,169 - ABZR87_RS19905 0.59 -0.5
843,169 - ABZR87_RS19905 0.59 -2.5
843,524 + +0.4
843,525 - +0.5
843,525 - -0.8
843,687 + ABZR87_RS19910 0.21 -0.5
843,687 + ABZR87_RS19910 0.21 +0.4
843,687 + ABZR87_RS19910 0.21 +1.6
843,687 + ABZR87_RS19910 0.21 -0.2
843,687 + ABZR87_RS19910 0.21 -0.6
843,687 + ABZR87_RS19910 0.21 -2.1
843,687 + ABZR87_RS19910 0.21 +0.1
843,687 + ABZR87_RS19910 0.21 -0.3
843,688 - ABZR87_RS19910 0.21 +0.4
843,688 - ABZR87_RS19910 0.21 -0.1
843,688 - ABZR87_RS19910 0.21 -1.0
843,806 + ABZR87_RS19910 0.29 +0.1
843,806 + ABZR87_RS19910 0.29 -0.2
843,807 - ABZR87_RS19910 0.29 +0.3
843,957 - ABZR87_RS19910 0.39 -0.1
844,217 + ABZR87_RS19910 0.57 -0.6
844,218 - ABZR87_RS19910 0.57 +0.3
844,266 - ABZR87_RS19910 0.61 +0.3
844,402 + ABZR87_RS19910 0.70 -0.6
844,402 + ABZR87_RS19910 0.70 -0.5
844,402 + ABZR87_RS19910 0.70 -0.7
844,403 - ABZR87_RS19910 0.70 +0.1
844,403 - ABZR87_RS19910 0.70 -0.2
844,403 - ABZR87_RS19910 0.70 -0.3
844,686 + ABZR87_RS19910 0.90 -1.5
844,687 - ABZR87_RS19910 0.90 -0.4
844,825 + -0.5
844,825 + -0.9
844,825 + +0.7
844,826 - +0.2
844,826 - -0.6
845,024 + ABZR87_RS19915 0.16 +0.3
845,024 + ABZR87_RS19915 0.16 -1.1
845,025 - ABZR87_RS19915 0.16 +0.3
845,025 - ABZR87_RS19915 0.16 +0.5
845,127 - ABZR87_RS19915 0.25 +0.2
845,139 + ABZR87_RS19915 0.26 -0.7
845,140 - ABZR87_RS19915 0.26 +0.7
845,177 + ABZR87_RS19915 0.29 -1.3
845,177 + ABZR87_RS19915 0.29 +0.7
845,177 + ABZR87_RS19915 0.29 +0.3
845,177 + ABZR87_RS19915 0.29 -0.0
845,177 + ABZR87_RS19915 0.29 +0.0
845,177 + ABZR87_RS19915 0.29 +1.4
845,178 - ABZR87_RS19915 0.29 +1.2
845,178 - ABZR87_RS19915 0.29 -0.6
845,178 - ABZR87_RS19915 0.29 -0.3
845,178 - ABZR87_RS19915 0.29 -0.1
845,178 - ABZR87_RS19915 0.29 +0.5
845,178 - ABZR87_RS19915 0.29 +0.1
845,178 - ABZR87_RS19915 0.29 -0.5
845,178 - ABZR87_RS19915 0.29 -0.2
845,178 - ABZR87_RS19915 0.29 +0.8
845,178 - ABZR87_RS19915 0.29 -0.6
845,178 - ABZR87_RS19915 0.29 +0.4
845,179 + ABZR87_RS19915 0.29 -1.1
845,179 + ABZR87_RS19915 0.29 -0.0
845,327 + ABZR87_RS19915 0.42 +0.5
845,328 - ABZR87_RS19915 0.42 -0.0
845,328 - ABZR87_RS19915 0.42 -0.3
845,378 + ABZR87_RS19915 0.46 -0.1
845,379 - ABZR87_RS19915 0.46 +0.1
845,384 + ABZR87_RS19915 0.47 -0.5
845,384 + ABZR87_RS19915 0.47 +0.0
845,384 + ABZR87_RS19915 0.47 +0.6
845,385 - ABZR87_RS19915 0.47 -0.3
845,385 - ABZR87_RS19915 0.47 +1.3
845,385 - ABZR87_RS19915 0.47 -0.1
845,385 - ABZR87_RS19915 0.47 -0.7
845,385 - ABZR87_RS19915 0.47 +0.1
845,385 - ABZR87_RS19915 0.47 +0.9
845,385 - ABZR87_RS19915 0.47 -0.1
845,579 + ABZR87_RS19915 0.63 +0.2
845,579 + ABZR87_RS19915 0.63 -0.9
845,579 + ABZR87_RS19915 0.63 +0.7
845,579 + ABZR87_RS19915 0.63 -0.3
845,579 + ABZR87_RS19915 0.63 -0.8
845,579 + ABZR87_RS19915 0.63 +0.0
845,579 + ABZR87_RS19915 0.63 -0.5
845,579 + ABZR87_RS19915 0.63 +0.2
845,579 + ABZR87_RS19915 0.63 +1.2
845,579 + ABZR87_RS19915 0.63 -0.0
845,579 + ABZR87_RS19915 0.63 -0.2
845,580 - ABZR87_RS19915 0.63 -0.4
845,580 - ABZR87_RS19915 0.63 -0.8
845,580 - ABZR87_RS19915 0.63 -0.0
845,735 + ABZR87_RS19915 0.76 +0.6
845,735 + ABZR87_RS19915 0.76 -0.1
845,735 + ABZR87_RS19915 0.76 +1.0
845,736 - ABZR87_RS19915 0.76 -0.3
845,779 - ABZR87_RS19915 0.80 -0.3

Or see this region's nucleotide sequence