Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19545 and ABZR87_RS19550 overlap by 8 nucleotides ABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotides ABZR87_RS19555 and ABZR87_RS19560 are separated by 1 nucleotides ABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotides
ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539
_RS19545
ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458
_RS19550
ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457
_RS19555
ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394
_RS19560
ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720
_RS19565
Position (kb) 759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.538 kb on - strand at 758.679 kb on + strand, within ABZR87_RS19550 at 758.784 kb on + strand, within ABZR87_RS19550 at 758.785 kb on - strand, within ABZR87_RS19550 at 758.827 kb on + strand, within ABZR87_RS19550 at 758.828 kb on - strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.875 kb on - strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.456 kb on + strand at 759.457 kb on - strand at 759.457 kb on - strand at 759.804 kb on + strand, within ABZR87_RS19555 at 759.805 kb on - strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.842 kb on + strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.843 kb on - strand, within ABZR87_RS19555 at 759.940 kb on - strand, within ABZR87_RS19555 at 759.950 kb on + strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 759.951 kb on - strand, within ABZR87_RS19555 at 760.181 kb on + strand, within ABZR87_RS19555 at 760.223 kb on + strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.224 kb on - strand, within ABZR87_RS19555 at 760.442 kb on + strand at 760.442 kb on + strand at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.678 kb on + strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.679 kb on - strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.681 kb on + strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.682 kb on - strand, within ABZR87_RS19560 at 760.699 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.709 kb on - strand, within ABZR87_RS19560 at 760.721 kb on - strand, within ABZR87_RS19560
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 758,537 + -1.5 758,537 + -1.1 758,537 + +2.0 758,537 + +0.4 758,538 - -0.9 758,679 + ABZR87_RS19550 0.16 -0.2 758,784 + ABZR87_RS19550 0.27 -1.8 758,785 - ABZR87_RS19550 0.27 +0.4 758,827 + ABZR87_RS19550 0.32 -1.6 758,828 - ABZR87_RS19550 0.32 -0.1 758,874 + ABZR87_RS19550 0.37 +0.7 758,874 + ABZR87_RS19550 0.37 +0.5 758,874 + ABZR87_RS19550 0.37 -1.7 758,875 - ABZR87_RS19550 0.37 -0.9 759,348 + ABZR87_RS19550 0.88 -1.1 759,348 + ABZR87_RS19550 0.88 -0.7 759,348 + ABZR87_RS19550 0.88 -0.8 759,348 + ABZR87_RS19550 0.88 -3.5 759,348 + ABZR87_RS19550 0.88 -1.6 759,348 + ABZR87_RS19550 0.88 -1.2 759,348 + ABZR87_RS19550 0.88 -1.4 759,349 - ABZR87_RS19550 0.88 -2.3 759,349 - ABZR87_RS19550 0.88 -0.8 759,349 - ABZR87_RS19550 0.88 -0.9 759,349 - ABZR87_RS19550 0.88 -0.9 759,349 - ABZR87_RS19550 0.88 -0.3 759,349 - ABZR87_RS19550 0.88 -1.8 759,349 - ABZR87_RS19550 0.88 -0.4 759,349 - ABZR87_RS19550 0.88 -0.4 759,456 + +1.7 759,457 - -1.4 759,457 - -0.5 759,804 + ABZR87_RS19555 0.34 -0.8 759,805 - ABZR87_RS19555 0.34 +0.8 759,842 + ABZR87_RS19555 0.38 -1.8 759,842 + ABZR87_RS19555 0.38 +0.6 759,843 - ABZR87_RS19555 0.38 +0.0 759,843 - ABZR87_RS19555 0.38 +0.4 759,940 - ABZR87_RS19555 0.48 +0.3 759,950 + ABZR87_RS19555 0.49 -0.8 759,951 - ABZR87_RS19555 0.49 -0.9 759,951 - ABZR87_RS19555 0.49 -0.2 759,951 - ABZR87_RS19555 0.49 -0.5 759,951 - ABZR87_RS19555 0.49 -1.7 759,951 - ABZR87_RS19555 0.49 -0.5 759,951 - ABZR87_RS19555 0.49 -2.3 760,181 + ABZR87_RS19555 0.72 -0.3 760,223 + ABZR87_RS19555 0.76 -0.7 760,224 - ABZR87_RS19555 0.76 -1.4 760,224 - ABZR87_RS19555 0.76 -0.2 760,442 + +0.7 760,442 + -0.7 760,678 + ABZR87_RS19560 0.23 -1.3 760,678 + ABZR87_RS19560 0.23 +0.5 760,678 + ABZR87_RS19560 0.23 -1.0 760,679 - ABZR87_RS19560 0.24 -1.5 760,679 - ABZR87_RS19560 0.24 -1.7 760,679 - ABZR87_RS19560 0.24 +0.5 760,681 + ABZR87_RS19560 0.24 -0.1 760,681 + ABZR87_RS19560 0.24 -1.0 760,681 + ABZR87_RS19560 0.24 +1.0 760,682 - ABZR87_RS19560 0.24 -1.1 760,682 - ABZR87_RS19560 0.24 -2.0 760,699 - ABZR87_RS19560 0.26 +0.4 760,709 - ABZR87_RS19560 0.27 -0.7 760,709 - ABZR87_RS19560 0.27 -1.1 760,721 - ABZR87_RS19560 0.28 +1.0
Or see this region's nucleotide sequence