Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19540 and ABZR87_RS19545 overlap by 4 nucleotides ABZR87_RS19545 and ABZR87_RS19550 overlap by 8 nucleotides ABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotides
ABZR87_RS19540: ABZR87_RS19540 - CpaE family protein, at 755,844 to 757,187
_RS19540
ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539
_RS19545
ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458
_RS19550
ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457
_RS19555
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 756.460 kb on - strand, within ABZR87_RS19540 at 756.460 kb on - strand, within ABZR87_RS19540 at 756.854 kb on + strand, within ABZR87_RS19540 at 756.854 kb on + strand, within ABZR87_RS19540 at 756.854 kb on + strand, within ABZR87_RS19540 at 756.996 kb on + strand, within ABZR87_RS19540 at 756.996 kb on + strand, within ABZR87_RS19540 at 756.997 kb on - strand, within ABZR87_RS19540 at 756.997 kb on - strand, within ABZR87_RS19540 at 757.378 kb on + strand, within ABZR87_RS19545 at 757.378 kb on + strand, within ABZR87_RS19545 at 757.379 kb on - strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.529 kb on + strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.530 kb on - strand, within ABZR87_RS19545 at 757.901 kb on + strand, within ABZR87_RS19545 at 757.902 kb on - strand, within ABZR87_RS19545 at 757.902 kb on - strand, within ABZR87_RS19545 at 758.129 kb on - strand, within ABZR87_RS19545 at 758.372 kb on + strand, within ABZR87_RS19545 at 758.373 kb on - strand, within ABZR87_RS19545 at 758.378 kb on + strand, within ABZR87_RS19545 at 758.379 kb on - strand, within ABZR87_RS19545 at 758.387 kb on + strand, within ABZR87_RS19545 at 758.388 kb on - strand, within ABZR87_RS19545 at 758.388 kb on - strand, within ABZR87_RS19545 at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.537 kb on + strand at 758.538 kb on - strand at 758.679 kb on + strand, within ABZR87_RS19550 at 758.784 kb on + strand, within ABZR87_RS19550 at 758.785 kb on - strand, within ABZR87_RS19550 at 758.827 kb on + strand, within ABZR87_RS19550 at 758.828 kb on - strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.874 kb on + strand, within ABZR87_RS19550 at 758.875 kb on - strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.348 kb on + strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.349 kb on - strand, within ABZR87_RS19550 at 759.456 kb on + strand at 759.457 kb on - strand at 759.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 756,460 - ABZR87_RS19540 0.46 -0.2 756,460 - ABZR87_RS19540 0.46 -2.4 756,854 + ABZR87_RS19540 0.75 -0.2 756,854 + ABZR87_RS19540 0.75 -1.3 756,854 + ABZR87_RS19540 0.75 -0.5 756,996 + ABZR87_RS19540 0.86 -1.3 756,996 + ABZR87_RS19540 0.86 -1.8 756,997 - ABZR87_RS19540 0.86 -0.9 756,997 - ABZR87_RS19540 0.86 +0.5 757,378 + ABZR87_RS19545 0.14 -1.5 757,378 + ABZR87_RS19545 0.14 +0.5 757,379 - ABZR87_RS19545 0.14 -1.2 757,529 + ABZR87_RS19545 0.25 -0.8 757,529 + ABZR87_RS19545 0.25 -1.0 757,529 + ABZR87_RS19545 0.25 -0.9 757,529 + ABZR87_RS19545 0.25 -0.6 757,530 - ABZR87_RS19545 0.26 +0.5 757,530 - ABZR87_RS19545 0.26 -2.1 757,530 - ABZR87_RS19545 0.26 -1.7 757,530 - ABZR87_RS19545 0.26 -0.2 757,530 - ABZR87_RS19545 0.26 -2.2 757,901 + ABZR87_RS19545 0.53 -0.5 757,902 - ABZR87_RS19545 0.53 -1.5 757,902 - ABZR87_RS19545 0.53 -0.6 758,129 - ABZR87_RS19545 0.70 +0.7 758,372 + ABZR87_RS19545 0.88 -1.5 758,373 - ABZR87_RS19545 0.88 +0.5 758,378 + ABZR87_RS19545 0.88 -0.6 758,379 - ABZR87_RS19545 0.88 -0.7 758,387 + ABZR87_RS19545 0.89 -0.3 758,388 - ABZR87_RS19545 0.89 -1.1 758,388 - ABZR87_RS19545 0.89 -1.2 758,537 + -1.5 758,537 + -1.1 758,537 + +2.0 758,537 + +0.4 758,538 - -0.9 758,679 + ABZR87_RS19550 0.16 -0.2 758,784 + ABZR87_RS19550 0.27 -1.8 758,785 - ABZR87_RS19550 0.27 +0.4 758,827 + ABZR87_RS19550 0.32 -1.6 758,828 - ABZR87_RS19550 0.32 -0.1 758,874 + ABZR87_RS19550 0.37 +0.7 758,874 + ABZR87_RS19550 0.37 +0.5 758,874 + ABZR87_RS19550 0.37 -1.7 758,875 - ABZR87_RS19550 0.37 -0.9 759,348 + ABZR87_RS19550 0.88 -1.1 759,348 + ABZR87_RS19550 0.88 -0.7 759,348 + ABZR87_RS19550 0.88 -0.8 759,348 + ABZR87_RS19550 0.88 -3.5 759,348 + ABZR87_RS19550 0.88 -1.6 759,348 + ABZR87_RS19550 0.88 -1.2 759,348 + ABZR87_RS19550 0.88 -1.4 759,349 - ABZR87_RS19550 0.88 -2.3 759,349 - ABZR87_RS19550 0.88 -0.8 759,349 - ABZR87_RS19550 0.88 -0.9 759,349 - ABZR87_RS19550 0.88 -0.9 759,349 - ABZR87_RS19550 0.88 -0.3 759,349 - ABZR87_RS19550 0.88 -1.8 759,349 - ABZR87_RS19550 0.88 -0.4 759,349 - ABZR87_RS19550 0.88 -0.4 759,456 + +1.7 759,457 - -1.4 759,457 - -0.5
Or see this region's nucleotide sequence