Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19515 and ABZR87_RS19520 are separated by 92 nucleotides ABZR87_RS19520 and ABZR87_RS19525 are separated by 62 nucleotides ABZR87_RS19525 and ABZR87_RS19530 are separated by 76 nucleotides
ABZR87_RS19515: ABZR87_RS19515 - Flp family type IVb pilin, at 752,172 to 752,351
_RS19515
ABZR87_RS19520: ABZR87_RS19520 - prepilin peptidase, at 752,444 to 752,908
_RS19520
ABZR87_RS19525: ABZR87_RS19525 - TadE/TadG family type IV pilus assembly protein, at 752,971 to 753,474
_RS19525
ABZR87_RS19530: ABZR87_RS19530 - Flp pilus assembly protein CpaB, at 753,551 to 754,477
_RS19530
ABZR87_RS19535: ABZR87_RS19535 - type II and III secretion system protein family protein, at 754,470 to 755,834
_RS19535
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 751.977 kb on + strand at 751.978 kb on - strand at 752.008 kb on + strand at 752.057 kb on + strand at 752.057 kb on + strand at 752.057 kb on + strand at 752.074 kb on + strand at 752.075 kb on - strand at 752.082 kb on - strand at 752.084 kb on + strand at 752.085 kb on - strand at 752.092 kb on - strand at 752.092 kb on - strand at 752.229 kb on + strand, within ABZR87_RS19515 at 752.339 kb on + strand at 752.339 kb on + strand at 752.340 kb on - strand at 752.340 kb on - strand at 752.350 kb on - strand at 752.374 kb on + strand at 752.374 kb on + strand at 752.374 kb on + strand at 752.397 kb on + strand at 752.397 kb on + strand at 752.397 kb on + strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.398 kb on - strand at 752.416 kb on + strand at 752.416 kb on + strand at 752.416 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.419 kb on + strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.420 kb on - strand at 752.522 kb on + strand, within ABZR87_RS19520 at 752.523 kb on - strand, within ABZR87_RS19520 at 752.523 kb on - strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.582 kb on + strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.583 kb on - strand, within ABZR87_RS19520 at 752.687 kb on - strand, within ABZR87_RS19520 at 752.687 kb on - strand, within ABZR87_RS19520 at 752.687 kb on - strand, within ABZR87_RS19520 at 752.819 kb on - strand, within ABZR87_RS19520 at 752.819 kb on - strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.834 kb on + strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.835 kb on - strand, within ABZR87_RS19520 at 752.836 kb on + strand, within ABZR87_RS19520 at 752.836 kb on + strand, within ABZR87_RS19520 at 752.837 kb on - strand, within ABZR87_RS19520 at 752.907 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.907 kb on - strand at 752.953 kb on + strand at 752.953 kb on + strand at 752.954 kb on - strand at 752.955 kb on + strand at 752.956 kb on - strand at 752.956 kb on - strand at 752.956 kb on - strand at 752.956 kb on - strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.004 kb on + strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.005 kb on - strand at 753.019 kb on - strand at 753.032 kb on + strand, within ABZR87_RS19525 at 753.130 kb on + strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.131 kb on - strand, within ABZR87_RS19525 at 753.133 kb on + strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.134 kb on - strand, within ABZR87_RS19525 at 753.206 kb on - strand, within ABZR87_RS19525 at 753.206 kb on - strand, within ABZR87_RS19525 at 753.206 kb on - strand, within ABZR87_RS19525 at 753.242 kb on - strand, within ABZR87_RS19525 at 753.242 kb on - strand, within ABZR87_RS19525 at 753.261 kb on - strand, within ABZR87_RS19525 at 753.407 kb on + strand, within ABZR87_RS19525 at 753.408 kb on - strand, within ABZR87_RS19525 at 753.408 kb on - strand, within ABZR87_RS19525 at 753.472 kb on + strand at 753.472 kb on + strand at 753.472 kb on + strand at 753.472 kb on + strand at 753.473 kb on - strand at 753.473 kb on - strand at 753.473 kb on - strand at 753.536 kb on - strand at 753.619 kb on - strand at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.681 kb on + strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.682 kb on - strand, within ABZR87_RS19530 at 753.683 kb on + strand, within ABZR87_RS19530 at 753.698 kb on - strand, within ABZR87_RS19530 at 753.698 kb on - strand, within ABZR87_RS19530 at 753.962 kb on + strand, within ABZR87_RS19530 at 753.962 kb on + strand, within ABZR87_RS19530 at 753.963 kb on - strand, within ABZR87_RS19530 at 753.963 kb on - strand, within ABZR87_RS19530
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 751,977 + -0.7 751,978 - -0.3 752,008 + -0.8 752,057 + +0.1 752,057 + -1.1 752,057 + +0.2 752,074 + +1.2 752,075 - -0.5 752,082 - -0.1 752,084 + +0.9 752,085 - -0.5 752,092 - +0.3 752,092 - -0.4 752,229 + ABZR87_RS19515 0.32 +1.0 752,339 + -0.5 752,339 + -1.6 752,340 - -1.1 752,340 - -0.5 752,350 - -3.0 752,374 + -0.8 752,374 + -0.3 752,374 + -1.5 752,397 + -1.2 752,397 + +1.0 752,397 + +1.5 752,398 - -0.2 752,398 - -1.1 752,398 - -0.4 752,398 - -2.4 752,398 - -0.3 752,416 + -0.3 752,416 + -1.4 752,416 + -1.4 752,419 + -0.8 752,419 + +0.1 752,419 + +0.0 752,419 + -0.9 752,419 + -0.5 752,419 + -1.3 752,419 + -1.7 752,419 + +0.2 752,419 + -0.0 752,419 + -0.1 752,420 - -1.3 752,420 - -0.8 752,420 - -0.3 752,420 - -0.8 752,420 - -0.2 752,420 - -1.0 752,420 - +0.6 752,522 + ABZR87_RS19520 0.17 -0.4 752,523 - ABZR87_RS19520 0.17 -0.1 752,523 - ABZR87_RS19520 0.17 -2.6 752,582 + ABZR87_RS19520 0.30 -0.7 752,582 + ABZR87_RS19520 0.30 -0.3 752,582 + ABZR87_RS19520 0.30 -1.0 752,582 + ABZR87_RS19520 0.30 -2.1 752,582 + ABZR87_RS19520 0.30 -1.6 752,582 + ABZR87_RS19520 0.30 +0.3 752,583 - ABZR87_RS19520 0.30 +0.9 752,583 - ABZR87_RS19520 0.30 -0.7 752,583 - ABZR87_RS19520 0.30 -0.9 752,583 - ABZR87_RS19520 0.30 -0.9 752,583 - ABZR87_RS19520 0.30 -0.8 752,583 - ABZR87_RS19520 0.30 -2.8 752,583 - ABZR87_RS19520 0.30 -0.3 752,687 - ABZR87_RS19520 0.52 -1.9 752,687 - ABZR87_RS19520 0.52 -0.7 752,687 - ABZR87_RS19520 0.52 -0.1 752,819 - ABZR87_RS19520 0.81 -0.3 752,819 - ABZR87_RS19520 0.81 -1.9 752,834 + ABZR87_RS19520 0.84 -0.3 752,834 + ABZR87_RS19520 0.84 -1.1 752,834 + ABZR87_RS19520 0.84 -1.3 752,834 + ABZR87_RS19520 0.84 -0.8 752,834 + ABZR87_RS19520 0.84 -0.1 752,834 + ABZR87_RS19520 0.84 -1.7 752,834 + ABZR87_RS19520 0.84 -1.1 752,834 + ABZR87_RS19520 0.84 -0.4 752,834 + ABZR87_RS19520 0.84 -0.8 752,835 - ABZR87_RS19520 0.84 -1.1 752,835 - ABZR87_RS19520 0.84 +0.1 752,835 - ABZR87_RS19520 0.84 -2.1 752,835 - ABZR87_RS19520 0.84 +0.3 752,835 - ABZR87_RS19520 0.84 -2.2 752,835 - ABZR87_RS19520 0.84 -1.1 752,835 - ABZR87_RS19520 0.84 -1.1 752,835 - ABZR87_RS19520 0.84 -1.1 752,835 - ABZR87_RS19520 0.84 -0.7 752,835 - ABZR87_RS19520 0.84 -0.9 752,835 - ABZR87_RS19520 0.84 -0.4 752,835 - ABZR87_RS19520 0.84 -1.2 752,835 - ABZR87_RS19520 0.84 -0.6 752,835 - ABZR87_RS19520 0.84 -1.0 752,836 + ABZR87_RS19520 0.84 -1.4 752,836 + ABZR87_RS19520 0.84 -0.8 752,837 - ABZR87_RS19520 0.85 -0.4 752,907 - -0.9 752,907 - -0.4 752,907 - +0.2 752,907 - -0.9 752,953 + +0.1 752,953 + +0.3 752,954 - +2.6 752,955 + -0.5 752,956 - +0.1 752,956 - -0.5 752,956 - -1.0 752,956 - -0.8 753,004 + +1.6 753,004 + -1.0 753,004 + -2.7 753,004 + -2.9 753,004 + +0.4 753,004 + +0.6 753,004 + -0.6 753,004 + -0.1 753,004 + -1.0 753,004 + -0.3 753,005 - -0.5 753,005 - -1.2 753,005 - -0.1 753,005 - -1.0 753,005 - -2.1 753,005 - -0.6 753,005 - -1.5 753,005 - -2.4 753,005 - -1.6 753,005 - -0.4 753,005 - -0.6 753,005 - -1.1 753,005 - -0.9 753,019 - +0.0 753,032 + ABZR87_RS19525 0.12 -1.9 753,130 + ABZR87_RS19525 0.32 -1.5 753,131 - ABZR87_RS19525 0.32 -2.6 753,131 - ABZR87_RS19525 0.32 -1.1 753,131 - ABZR87_RS19525 0.32 -0.8 753,131 - ABZR87_RS19525 0.32 -0.7 753,131 - ABZR87_RS19525 0.32 -0.6 753,131 - ABZR87_RS19525 0.32 -1.0 753,131 - ABZR87_RS19525 0.32 +0.1 753,133 + ABZR87_RS19525 0.32 -1.4 753,134 - ABZR87_RS19525 0.32 -0.3 753,134 - ABZR87_RS19525 0.32 -1.8 753,134 - ABZR87_RS19525 0.32 -0.3 753,134 - ABZR87_RS19525 0.32 -0.3 753,206 - ABZR87_RS19525 0.47 -0.3 753,206 - ABZR87_RS19525 0.47 -1.3 753,206 - ABZR87_RS19525 0.47 -1.2 753,242 - ABZR87_RS19525 0.54 -0.3 753,242 - ABZR87_RS19525 0.54 +0.0 753,261 - ABZR87_RS19525 0.58 -1.4 753,407 + ABZR87_RS19525 0.87 -1.0 753,408 - ABZR87_RS19525 0.87 +0.4 753,408 - ABZR87_RS19525 0.87 -1.7 753,472 + +0.7 753,472 + +0.0 753,472 + +0.5 753,472 + -0.2 753,473 - -0.7 753,473 - -2.8 753,473 - -1.8 753,536 - -0.6 753,619 - +0.6 753,681 + ABZR87_RS19530 0.14 -0.0 753,681 + ABZR87_RS19530 0.14 -2.0 753,681 + ABZR87_RS19530 0.14 -1.0 753,681 + ABZR87_RS19530 0.14 -2.5 753,681 + ABZR87_RS19530 0.14 -1.4 753,681 + ABZR87_RS19530 0.14 +0.5 753,681 + ABZR87_RS19530 0.14 -0.5 753,682 - ABZR87_RS19530 0.14 -0.7 753,682 - ABZR87_RS19530 0.14 -2.6 753,682 - ABZR87_RS19530 0.14 -1.9 753,682 - ABZR87_RS19530 0.14 -0.7 753,682 - ABZR87_RS19530 0.14 -0.3 753,682 - ABZR87_RS19530 0.14 -1.0 753,682 - ABZR87_RS19530 0.14 -1.4 753,683 + ABZR87_RS19530 0.14 -0.1 753,698 - ABZR87_RS19530 0.16 -3.0 753,698 - ABZR87_RS19530 0.16 -1.0 753,962 + ABZR87_RS19530 0.44 +0.8 753,962 + ABZR87_RS19530 0.44 -1.9 753,963 - ABZR87_RS19530 0.44 -0.8 753,963 - ABZR87_RS19530 0.44 -0.1
Or see this region's nucleotide sequence