Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19055 and ABZR87_RS19060 overlap by 7 nucleotides ABZR87_RS19060 and ABZR87_RS19065 are separated by 5 nucleotides ABZR87_RS19065 and ABZR87_RS19070 are separated by 23 nucleotides
ABZR87_RS19055: ABZR87_RS19055 - LysR family transcriptional regulator, at 637,440 to 638,411
_RS19055
ABZR87_RS19060: ABZR87_RS19060 - glyoxylate/hydroxypyruvate reductase A, at 638,405 to 639,331
_RS19060
ABZR87_RS19065: ABZR87_RS19065 - class II aldolase/adducin family protein, at 639,337 to 640,137
_RS19065
ABZR87_RS19070: ABZR87_RS19070 - MFS transporter, at 640,161 to 641,480
_RS19070
Position (kb) 638
639
640 Strain fitness (log2 ratio) -2
-1
0
1 at 637.417 kb on + strand at 637.417 kb on + strand at 637.417 kb on + strand at 637.418 kb on - strand at 637.418 kb on - strand at 637.464 kb on + strand at 637.464 kb on + strand at 637.465 kb on - strand at 637.465 kb on - strand at 637.465 kb on - strand at 637.692 kb on + strand, within ABZR87_RS19055 at 637.692 kb on + strand, within ABZR87_RS19055 at 637.693 kb on - strand, within ABZR87_RS19055 at 637.693 kb on - strand, within ABZR87_RS19055 at 637.693 kb on - strand, within ABZR87_RS19055 at 637.794 kb on + strand, within ABZR87_RS19055 at 637.794 kb on + strand, within ABZR87_RS19055 at 637.912 kb on + strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.971 kb on + strand, within ABZR87_RS19055 at 637.971 kb on + strand, within ABZR87_RS19055 at 637.971 kb on + strand, within ABZR87_RS19055 at 637.972 kb on - strand, within ABZR87_RS19055 at 637.972 kb on - strand, within ABZR87_RS19055 at 637.992 kb on + strand, within ABZR87_RS19055 at 637.992 kb on + strand, within ABZR87_RS19055 at 638.296 kb on + strand, within ABZR87_RS19055 at 638.297 kb on - strand, within ABZR87_RS19055 at 638.297 kb on - strand, within ABZR87_RS19055 at 638.374 kb on - strand at 638.409 kb on + strand at 638.409 kb on + strand at 638.483 kb on + strand at 638.483 kb on + strand at 638.484 kb on - strand at 638.484 kb on - strand at 638.484 kb on - strand at 638.767 kb on + strand, within ABZR87_RS19060 at 638.767 kb on + strand, within ABZR87_RS19060 at 638.768 kb on - strand, within ABZR87_RS19060 at 638.768 kb on - strand, within ABZR87_RS19060 at 638.811 kb on + strand, within ABZR87_RS19060 at 638.811 kb on + strand, within ABZR87_RS19060 at 639.237 kb on + strand, within ABZR87_RS19060 at 639.238 kb on - strand, within ABZR87_RS19060 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.530 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.665 kb on + strand, within ABZR87_RS19065 at 639.666 kb on - strand, within ABZR87_RS19065 at 639.666 kb on - strand, within ABZR87_RS19065 at 639.674 kb on + strand, within ABZR87_RS19065 at 639.675 kb on - strand, within ABZR87_RS19065 at 639.690 kb on - strand, within ABZR87_RS19065 at 639.690 kb on - strand, within ABZR87_RS19065 at 639.762 kb on + strand, within ABZR87_RS19065 at 639.762 kb on + strand, within ABZR87_RS19065 at 639.763 kb on - strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.768 kb on + strand, within ABZR87_RS19065 at 639.945 kb on - strand, within ABZR87_RS19065 at 640.047 kb on - strand, within ABZR87_RS19065 at 640.047 kb on - strand, within ABZR87_RS19065 at 640.156 kb on - strand at 640.156 kb on - strand at 640.156 kb on - strand at 640.156 kb on - strand at 640.294 kb on + strand, within ABZR87_RS19070
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 637,417 + -0.7 637,417 + -0.2 637,417 + -0.1 637,418 - -0.4 637,418 - +1.0 637,464 + -0.3 637,464 + -0.3 637,465 - +0.9 637,465 - -0.1 637,465 - +0.1 637,692 + ABZR87_RS19055 0.26 +0.1 637,692 + ABZR87_RS19055 0.26 -0.6 637,693 - ABZR87_RS19055 0.26 +0.2 637,693 - ABZR87_RS19055 0.26 +0.2 637,693 - ABZR87_RS19055 0.26 +0.2 637,794 + ABZR87_RS19055 0.36 +1.1 637,794 + ABZR87_RS19055 0.36 -0.1 637,912 + ABZR87_RS19055 0.49 -0.4 637,913 - ABZR87_RS19055 0.49 +0.0 637,913 - ABZR87_RS19055 0.49 -0.7 637,913 - ABZR87_RS19055 0.49 +0.0 637,913 - ABZR87_RS19055 0.49 -0.3 637,913 - ABZR87_RS19055 0.49 -0.9 637,971 + ABZR87_RS19055 0.55 -1.2 637,971 + ABZR87_RS19055 0.55 +0.9 637,971 + ABZR87_RS19055 0.55 -0.1 637,972 - ABZR87_RS19055 0.55 -0.8 637,972 - ABZR87_RS19055 0.55 +0.5 637,992 + ABZR87_RS19055 0.57 -0.1 637,992 + ABZR87_RS19055 0.57 -1.0 638,296 + ABZR87_RS19055 0.88 -0.9 638,297 - ABZR87_RS19055 0.88 -1.1 638,297 - ABZR87_RS19055 0.88 -0.3 638,374 - +0.3 638,409 + -0.1 638,409 + +0.3 638,483 + -1.2 638,483 + +1.3 638,484 - +0.3 638,484 - +0.8 638,484 - +0.3 638,767 + ABZR87_RS19060 0.39 +0.3 638,767 + ABZR87_RS19060 0.39 +1.6 638,768 - ABZR87_RS19060 0.39 -0.2 638,768 - ABZR87_RS19060 0.39 -1.4 638,811 + ABZR87_RS19060 0.44 +1.6 638,811 + ABZR87_RS19060 0.44 +1.1 639,237 + ABZR87_RS19060 0.90 +0.9 639,238 - ABZR87_RS19060 0.90 +0.1 639,530 + ABZR87_RS19065 0.24 -0.6 639,530 + ABZR87_RS19065 0.24 -0.1 639,530 + ABZR87_RS19065 0.24 +0.6 639,665 + ABZR87_RS19065 0.41 +1.3 639,665 + ABZR87_RS19065 0.41 +0.1 639,665 + ABZR87_RS19065 0.41 -0.8 639,666 - ABZR87_RS19065 0.41 -0.4 639,666 - ABZR87_RS19065 0.41 +0.1 639,674 + ABZR87_RS19065 0.42 -0.1 639,675 - ABZR87_RS19065 0.42 +0.4 639,690 - ABZR87_RS19065 0.44 -1.5 639,690 - ABZR87_RS19065 0.44 +0.1 639,762 + ABZR87_RS19065 0.53 +0.4 639,762 + ABZR87_RS19065 0.53 -0.0 639,763 - ABZR87_RS19065 0.53 +0.2 639,768 + ABZR87_RS19065 0.54 -0.9 639,768 + ABZR87_RS19065 0.54 -0.1 639,768 + ABZR87_RS19065 0.54 +1.2 639,945 - ABZR87_RS19065 0.76 -1.9 640,047 - ABZR87_RS19065 0.89 +0.3 640,047 - ABZR87_RS19065 0.89 +0.3 640,156 - +0.2 640,156 - -0.4 640,156 - -0.3 640,156 - +0.1 640,294 + ABZR87_RS19070 0.10 -0.6
Or see this region's nucleotide sequence