Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18940 and ABZR87_RS18945 are separated by 132 nucleotides ABZR87_RS18945 and ABZR87_RS18950 are separated by 71 nucleotides
ABZR87_RS18940: ABZR87_RS18940 - quinone oxidoreductase, at 605,298 to 606,278
_RS18940
ABZR87_RS18945: ABZR87_RS18945 - MFS transporter, at 606,411 to 607,748
_RS18945
ABZR87_RS18950: ABZR87_RS18950 - 3-keto-5-aminohexanoate cleavage protein, at 607,820 to 608,875
_RS18950
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 605.470 kb on + strand, within ABZR87_RS18940 at 605.470 kb on + strand, within ABZR87_RS18940 at 605.471 kb on - strand, within ABZR87_RS18940 at 605.498 kb on - strand, within ABZR87_RS18940 at 605.701 kb on + strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.869 kb on + strand, within ABZR87_RS18940 at 605.870 kb on - strand, within ABZR87_RS18940 at 605.887 kb on + strand, within ABZR87_RS18940 at 605.993 kb on - strand, within ABZR87_RS18940 at 606.125 kb on - strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.282 kb on + strand at 606.282 kb on + strand at 606.295 kb on - strand at 606.494 kb on - strand at 606.494 kb on - strand at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.678 kb on + strand, within ABZR87_RS18945 at 606.679 kb on - strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.165 kb on + strand, within ABZR87_RS18945 at 607.166 kb on - strand, within ABZR87_RS18945 at 607.166 kb on - strand, within ABZR87_RS18945 at 607.414 kb on + strand, within ABZR87_RS18945 at 607.414 kb on + strand, within ABZR87_RS18945 at 607.415 kb on - strand, within ABZR87_RS18945 at 607.415 kb on - strand, within ABZR87_RS18945 at 607.455 kb on + strand, within ABZR87_RS18945 at 607.456 kb on - strand, within ABZR87_RS18945 at 607.456 kb on - strand, within ABZR87_RS18945 at 607.456 kb on - strand, within ABZR87_RS18945 at 607.639 kb on + strand at 607.639 kb on + strand at 607.640 kb on - strand at 607.640 kb on - strand at 607.705 kb on + strand at 607.706 kb on - strand at 607.821 kb on + strand at 607.908 kb on + strand at 607.909 kb on - strand at 607.909 kb on - strand at 607.927 kb on - strand, within ABZR87_RS18950 at 607.927 kb on - strand, within ABZR87_RS18950 at 607.927 kb on - strand, within ABZR87_RS18950 at 608.241 kb on + strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.242 kb on - strand, within ABZR87_RS18950 at 608.386 kb on - strand, within ABZR87_RS18950 at 608.430 kb on + strand, within ABZR87_RS18950 at 608.725 kb on - strand, within ABZR87_RS18950
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 605,470 + ABZR87_RS18940 0.18 +0.8 605,470 + ABZR87_RS18940 0.18 +0.3 605,471 - ABZR87_RS18940 0.18 -0.8 605,498 - ABZR87_RS18940 0.20 +0.2 605,701 + ABZR87_RS18940 0.41 -0.1 605,702 - ABZR87_RS18940 0.41 +1.5 605,702 - ABZR87_RS18940 0.41 +0.6 605,869 + ABZR87_RS18940 0.58 -0.6 605,870 - ABZR87_RS18940 0.58 +2.6 605,887 + ABZR87_RS18940 0.60 -2.0 605,993 - ABZR87_RS18940 0.71 +0.8 606,125 - ABZR87_RS18940 0.84 -0.3 606,142 + ABZR87_RS18940 0.86 +0.2 606,142 + ABZR87_RS18940 0.86 +0.4 606,142 + ABZR87_RS18940 0.86 -0.7 606,142 + ABZR87_RS18940 0.86 -0.4 606,143 - ABZR87_RS18940 0.86 -0.7 606,143 - ABZR87_RS18940 0.86 +0.2 606,282 + -0.0 606,282 + +0.2 606,295 - +0.1 606,494 - -0.0 606,494 - -0.2 606,678 + ABZR87_RS18945 0.20 -0.3 606,678 + ABZR87_RS18945 0.20 +1.0 606,678 + ABZR87_RS18945 0.20 +0.7 606,678 + ABZR87_RS18945 0.20 -1.2 606,678 + ABZR87_RS18945 0.20 -0.2 606,678 + ABZR87_RS18945 0.20 +0.3 606,678 + ABZR87_RS18945 0.20 +1.3 606,679 - ABZR87_RS18945 0.20 -0.1 607,165 + ABZR87_RS18945 0.56 +0.3 607,165 + ABZR87_RS18945 0.56 +0.1 607,165 + ABZR87_RS18945 0.56 +1.9 607,165 + ABZR87_RS18945 0.56 +1.7 607,165 + ABZR87_RS18945 0.56 -0.7 607,165 + ABZR87_RS18945 0.56 -1.0 607,166 - ABZR87_RS18945 0.56 +0.1 607,166 - ABZR87_RS18945 0.56 +0.6 607,414 + ABZR87_RS18945 0.75 +1.1 607,414 + ABZR87_RS18945 0.75 +0.2 607,415 - ABZR87_RS18945 0.75 -0.1 607,415 - ABZR87_RS18945 0.75 +2.0 607,455 + ABZR87_RS18945 0.78 +0.3 607,456 - ABZR87_RS18945 0.78 +0.8 607,456 - ABZR87_RS18945 0.78 -0.5 607,456 - ABZR87_RS18945 0.78 -1.6 607,639 + -1.8 607,639 + +1.6 607,640 - +0.1 607,640 - -0.2 607,705 + +0.3 607,706 - -1.4 607,821 + +0.0 607,908 + -0.1 607,909 - +0.7 607,909 - -0.1 607,927 - ABZR87_RS18950 0.10 +1.2 607,927 - ABZR87_RS18950 0.10 +0.8 607,927 - ABZR87_RS18950 0.10 +0.2 608,241 + ABZR87_RS18950 0.40 +0.1 608,242 - ABZR87_RS18950 0.40 -0.4 608,242 - ABZR87_RS18950 0.40 -0.9 608,242 - ABZR87_RS18950 0.40 +0.9 608,242 - ABZR87_RS18950 0.40 +0.1 608,386 - ABZR87_RS18950 0.54 -0.5 608,430 + ABZR87_RS18950 0.58 -0.9 608,725 - ABZR87_RS18950 0.86 +0.9
Or see this region's nucleotide sequence