Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18930 and ABZR87_RS18935 are separated by 57 nucleotides ABZR87_RS18935 and ABZR87_RS18940 are separated by 9 nucleotides
ABZR87_RS18930: ABZR87_RS18930 - porin, at 603,249 to 604,382
_RS18930
ABZR87_RS18935: ABZR87_RS18935 - TauD/TfdA family dioxygenase, at 604,440 to 605,288
_RS18935
ABZR87_RS18940: ABZR87_RS18940 - quinone oxidoreductase, at 605,298 to 606,278
_RS18940
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 603.496 kb on + strand, within ABZR87_RS18930 at 603.496 kb on + strand, within ABZR87_RS18930 at 603.532 kb on + strand, within ABZR87_RS18930 at 603.533 kb on - strand, within ABZR87_RS18930 at 603.553 kb on + strand, within ABZR87_RS18930 at 603.553 kb on + strand, within ABZR87_RS18930 at 603.643 kb on + strand, within ABZR87_RS18930 at 603.644 kb on - strand, within ABZR87_RS18930 at 603.718 kb on + strand, within ABZR87_RS18930 at 603.719 kb on - strand, within ABZR87_RS18930 at 603.761 kb on - strand, within ABZR87_RS18930 at 603.904 kb on + strand, within ABZR87_RS18930 at 603.904 kb on + strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.961 kb on + strand, within ABZR87_RS18930 at 603.961 kb on + strand, within ABZR87_RS18930 at 603.973 kb on + strand, within ABZR87_RS18930 at 603.974 kb on - strand, within ABZR87_RS18930 at 603.974 kb on - strand, within ABZR87_RS18930 at 604.019 kb on - strand, within ABZR87_RS18930 at 604.069 kb on + strand, within ABZR87_RS18930 at 604.069 kb on + strand, within ABZR87_RS18930 at 604.070 kb on - strand, within ABZR87_RS18930 at 604.277 kb on - strand at 604.277 kb on - strand at 604.304 kb on - strand at 604.442 kb on - strand at 604.498 kb on + strand at 604.499 kb on - strand at 604.513 kb on + strand at 604.514 kb on - strand at 604.580 kb on - strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.591 kb on + strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.592 kb on - strand, within ABZR87_RS18935 at 604.676 kb on - strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.708 kb on + strand, within ABZR87_RS18935 at 604.709 kb on - strand, within ABZR87_RS18935 at 604.709 kb on - strand, within ABZR87_RS18935 at 604.889 kb on - strand, within ABZR87_RS18935 at 605.041 kb on + strand, within ABZR87_RS18935 at 605.041 kb on + strand, within ABZR87_RS18935 at 605.042 kb on - strand, within ABZR87_RS18935 at 605.042 kb on - strand, within ABZR87_RS18935 at 605.377 kb on + strand at 605.377 kb on + strand at 605.378 kb on - strand at 605.470 kb on + strand, within ABZR87_RS18940 at 605.470 kb on + strand, within ABZR87_RS18940 at 605.471 kb on - strand, within ABZR87_RS18940 at 605.498 kb on - strand, within ABZR87_RS18940 at 605.701 kb on + strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.702 kb on - strand, within ABZR87_RS18940 at 605.869 kb on + strand, within ABZR87_RS18940 at 605.870 kb on - strand, within ABZR87_RS18940 at 605.887 kb on + strand, within ABZR87_RS18940 at 605.993 kb on - strand, within ABZR87_RS18940 at 606.125 kb on - strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.142 kb on + strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.143 kb on - strand, within ABZR87_RS18940 at 606.282 kb on + strand at 606.282 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 603,496 + ABZR87_RS18930 0.22 +0.1 603,496 + ABZR87_RS18930 0.22 +1.6 603,532 + ABZR87_RS18930 0.25 -0.7 603,533 - ABZR87_RS18930 0.25 -0.8 603,553 + ABZR87_RS18930 0.27 +0.1 603,553 + ABZR87_RS18930 0.27 +0.8 603,643 + ABZR87_RS18930 0.35 -0.1 603,644 - ABZR87_RS18930 0.35 -0.3 603,718 + ABZR87_RS18930 0.41 -0.1 603,719 - ABZR87_RS18930 0.41 +0.3 603,761 - ABZR87_RS18930 0.45 +0.5 603,904 + ABZR87_RS18930 0.58 -0.2 603,904 + ABZR87_RS18930 0.58 +0.0 603,905 - ABZR87_RS18930 0.58 +0.9 603,905 - ABZR87_RS18930 0.58 +1.0 603,905 - ABZR87_RS18930 0.58 -0.7 603,905 - ABZR87_RS18930 0.58 -0.3 603,961 + ABZR87_RS18930 0.63 +2.4 603,961 + ABZR87_RS18930 0.63 +0.6 603,973 + ABZR87_RS18930 0.64 +0.4 603,974 - ABZR87_RS18930 0.64 -0.5 603,974 - ABZR87_RS18930 0.64 +0.0 604,019 - ABZR87_RS18930 0.68 -1.3 604,069 + ABZR87_RS18930 0.72 +2.0 604,069 + ABZR87_RS18930 0.72 +0.2 604,070 - ABZR87_RS18930 0.72 +1.6 604,277 - +0.3 604,277 - +0.3 604,304 - +0.2 604,442 - -0.2 604,498 + -0.2 604,499 - -0.9 604,513 + +0.2 604,514 - -0.9 604,580 - ABZR87_RS18935 0.16 -0.7 604,591 + ABZR87_RS18935 0.18 +0.5 604,591 + ABZR87_RS18935 0.18 +0.2 604,591 + ABZR87_RS18935 0.18 -0.2 604,591 + ABZR87_RS18935 0.18 +0.4 604,592 - ABZR87_RS18935 0.18 -1.6 604,592 - ABZR87_RS18935 0.18 -0.6 604,592 - ABZR87_RS18935 0.18 -0.4 604,592 - ABZR87_RS18935 0.18 -0.4 604,592 - ABZR87_RS18935 0.18 +1.3 604,676 - ABZR87_RS18935 0.28 -0.7 604,708 + ABZR87_RS18935 0.32 -0.8 604,708 + ABZR87_RS18935 0.32 +3.6 604,708 + ABZR87_RS18935 0.32 -1.3 604,708 + ABZR87_RS18935 0.32 +0.2 604,708 + ABZR87_RS18935 0.32 -0.2 604,709 - ABZR87_RS18935 0.32 -0.0 604,709 - ABZR87_RS18935 0.32 -0.3 604,889 - ABZR87_RS18935 0.53 +0.1 605,041 + ABZR87_RS18935 0.71 -0.2 605,041 + ABZR87_RS18935 0.71 -0.8 605,042 - ABZR87_RS18935 0.71 -1.6 605,042 - ABZR87_RS18935 0.71 -0.3 605,377 + -0.0 605,377 + +0.7 605,378 - +0.1 605,470 + ABZR87_RS18940 0.18 +0.8 605,470 + ABZR87_RS18940 0.18 +0.3 605,471 - ABZR87_RS18940 0.18 -0.8 605,498 - ABZR87_RS18940 0.20 +0.2 605,701 + ABZR87_RS18940 0.41 -0.1 605,702 - ABZR87_RS18940 0.41 +1.5 605,702 - ABZR87_RS18940 0.41 +0.6 605,869 + ABZR87_RS18940 0.58 -0.6 605,870 - ABZR87_RS18940 0.58 +2.6 605,887 + ABZR87_RS18940 0.60 -2.0 605,993 - ABZR87_RS18940 0.71 +0.8 606,125 - ABZR87_RS18940 0.84 -0.3 606,142 + ABZR87_RS18940 0.86 +0.2 606,142 + ABZR87_RS18940 0.86 +0.4 606,142 + ABZR87_RS18940 0.86 -0.7 606,142 + ABZR87_RS18940 0.86 -0.4 606,143 - ABZR87_RS18940 0.86 -0.7 606,143 - ABZR87_RS18940 0.86 +0.2 606,282 + -0.0 606,282 + +0.2
Or see this region's nucleotide sequence