Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18915 and ABZR87_RS18920 are separated by 13 nucleotides ABZR87_RS18920 and ABZR87_RS18925 are separated by 14 nucleotides ABZR87_RS18925 and ABZR87_RS18930 are separated by 102 nucleotides
ABZR87_RS18915: ABZR87_RS18915 - MATE family efflux transporter, at 600,864 to 602,231
_RS18915
ABZR87_RS18920: ABZR87_RS18920 - Rieske (2Fe-2S) protein, at 602,245 to 602,556
_RS18920
ABZR87_RS18925: ABZR87_RS18925 - alpha/beta hydrolase, at 602,571 to 603,146
_RS18925
ABZR87_RS18930: ABZR87_RS18930 - porin, at 603,249 to 604,382
_RS18930
Position (kb) 602
603
604 Strain fitness (log2 ratio) -1
0
1
2 at 601.695 kb on + strand, within ABZR87_RS18915 at 601.722 kb on + strand, within ABZR87_RS18915 at 601.722 kb on + strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.723 kb on - strand, within ABZR87_RS18915 at 601.796 kb on + strand, within ABZR87_RS18915 at 602.172 kb on + strand at 602.172 kb on + strand at 602.173 kb on - strand at 602.176 kb on - strand at 602.246 kb on + strand at 602.247 kb on - strand at 602.448 kb on - strand, within ABZR87_RS18920 at 602.497 kb on + strand, within ABZR87_RS18920 at 602.497 kb on + strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.498 kb on - strand, within ABZR87_RS18920 at 602.812 kb on + strand, within ABZR87_RS18925 at 603.313 kb on + strand at 603.373 kb on + strand, within ABZR87_RS18930 at 603.373 kb on + strand, within ABZR87_RS18930 at 603.373 kb on + strand, within ABZR87_RS18930 at 603.374 kb on - strand, within ABZR87_RS18930 at 603.388 kb on + strand, within ABZR87_RS18930 at 603.415 kb on + strand, within ABZR87_RS18930 at 603.416 kb on - strand, within ABZR87_RS18930 at 603.496 kb on + strand, within ABZR87_RS18930 at 603.496 kb on + strand, within ABZR87_RS18930 at 603.532 kb on + strand, within ABZR87_RS18930 at 603.533 kb on - strand, within ABZR87_RS18930 at 603.553 kb on + strand, within ABZR87_RS18930 at 603.553 kb on + strand, within ABZR87_RS18930 at 603.643 kb on + strand, within ABZR87_RS18930 at 603.644 kb on - strand, within ABZR87_RS18930 at 603.718 kb on + strand, within ABZR87_RS18930 at 603.719 kb on - strand, within ABZR87_RS18930 at 603.761 kb on - strand, within ABZR87_RS18930 at 603.904 kb on + strand, within ABZR87_RS18930 at 603.904 kb on + strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.905 kb on - strand, within ABZR87_RS18930 at 603.961 kb on + strand, within ABZR87_RS18930 at 603.961 kb on + strand, within ABZR87_RS18930 at 603.973 kb on + strand, within ABZR87_RS18930 at 603.974 kb on - strand, within ABZR87_RS18930 at 603.974 kb on - strand, within ABZR87_RS18930 at 604.019 kb on - strand, within ABZR87_RS18930 at 604.069 kb on + strand, within ABZR87_RS18930 at 604.069 kb on + strand, within ABZR87_RS18930 at 604.070 kb on - strand, within ABZR87_RS18930
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 601,695 + ABZR87_RS18915 0.61 +0.8 601,722 + ABZR87_RS18915 0.63 -0.5 601,722 + ABZR87_RS18915 0.63 -0.0 601,723 - ABZR87_RS18915 0.63 -0.1 601,723 - ABZR87_RS18915 0.63 -0.5 601,723 - ABZR87_RS18915 0.63 -0.5 601,796 + ABZR87_RS18915 0.68 +0.0 602,172 + +0.8 602,172 + +0.5 602,173 - +0.2 602,176 - -0.1 602,246 + +0.7 602,247 - -0.6 602,448 - ABZR87_RS18920 0.65 -0.8 602,497 + ABZR87_RS18920 0.81 +0.7 602,497 + ABZR87_RS18920 0.81 -0.4 602,498 - ABZR87_RS18920 0.81 -0.0 602,498 - ABZR87_RS18920 0.81 -0.2 602,498 - ABZR87_RS18920 0.81 -0.2 602,812 + ABZR87_RS18925 0.42 -0.0 603,313 + -0.0 603,373 + ABZR87_RS18930 0.11 -0.1 603,373 + ABZR87_RS18930 0.11 +0.2 603,373 + ABZR87_RS18930 0.11 -0.9 603,374 - ABZR87_RS18930 0.11 -0.3 603,388 + ABZR87_RS18930 0.12 +0.4 603,415 + ABZR87_RS18930 0.15 -0.4 603,416 - ABZR87_RS18930 0.15 +0.9 603,496 + ABZR87_RS18930 0.22 +0.1 603,496 + ABZR87_RS18930 0.22 +1.6 603,532 + ABZR87_RS18930 0.25 -0.7 603,533 - ABZR87_RS18930 0.25 -0.8 603,553 + ABZR87_RS18930 0.27 +0.1 603,553 + ABZR87_RS18930 0.27 +0.8 603,643 + ABZR87_RS18930 0.35 -0.1 603,644 - ABZR87_RS18930 0.35 -0.3 603,718 + ABZR87_RS18930 0.41 -0.1 603,719 - ABZR87_RS18930 0.41 +0.3 603,761 - ABZR87_RS18930 0.45 +0.5 603,904 + ABZR87_RS18930 0.58 -0.2 603,904 + ABZR87_RS18930 0.58 +0.0 603,905 - ABZR87_RS18930 0.58 +0.9 603,905 - ABZR87_RS18930 0.58 +1.0 603,905 - ABZR87_RS18930 0.58 -0.7 603,905 - ABZR87_RS18930 0.58 -0.3 603,961 + ABZR87_RS18930 0.63 +2.4 603,961 + ABZR87_RS18930 0.63 +0.6 603,973 + ABZR87_RS18930 0.64 +0.4 603,974 - ABZR87_RS18930 0.64 -0.5 603,974 - ABZR87_RS18930 0.64 +0.0 604,019 - ABZR87_RS18930 0.68 -1.3 604,069 + ABZR87_RS18930 0.72 +2.0 604,069 + ABZR87_RS18930 0.72 +0.2 604,070 - ABZR87_RS18930 0.72 +1.6
Or see this region's nucleotide sequence