Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18665 and ABZR87_RS18670 are separated by 33 nucleotides ABZR87_RS18670 and ABZR87_RS18675 are separated by 34 nucleotides ABZR87_RS18675 and ABZR87_RS18680 overlap by 4 nucleotides
ABZR87_RS18665: ABZR87_RS18665 - D-arabinitol 4-dehydrogenase, at 540,526 to 541,944
_RS18665
ABZR87_RS18670: ABZR87_RS18670 - ABC transporter ATP-binding protein, at 541,978 to 543,096
_RS18670
ABZR87_RS18675: ABZR87_RS18675 - HAD family phosphatase, at 543,131 to 543,847
_RS18675
ABZR87_RS18680: ABZR87_RS18680 - carbohydrate ABC transporter permease, at 543,844 to 544,665
_RS18680
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.001 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.517 kb on + strand, within ABZR87_RS18665 at 541.518 kb on - strand, within ABZR87_RS18665 at 541.518 kb on - strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.595 kb on + strand, within ABZR87_RS18665 at 541.596 kb on - strand, within ABZR87_RS18665 at 541.596 kb on - strand, within ABZR87_RS18665 at 541.598 kb on + strand, within ABZR87_RS18665 at 541.718 kb on + strand, within ABZR87_RS18665 at 541.718 kb on + strand, within ABZR87_RS18665 at 541.719 kb on - strand, within ABZR87_RS18665 at 541.758 kb on - strand, within ABZR87_RS18665 at 541.826 kb on - strand at 541.868 kb on + strand at 541.868 kb on + strand at 541.868 kb on + strand at 541.869 kb on - strand at 542.168 kb on + strand, within ABZR87_RS18670 at 542.168 kb on + strand, within ABZR87_RS18670 at 542.169 kb on - strand, within ABZR87_RS18670 at 542.432 kb on + strand, within ABZR87_RS18670 at 542.432 kb on + strand, within ABZR87_RS18670 at 542.432 kb on + strand, within ABZR87_RS18670 at 542.433 kb on - strand, within ABZR87_RS18670 at 542.433 kb on - strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.531 kb on + strand, within ABZR87_RS18670 at 542.532 kb on - strand, within ABZR87_RS18670 at 542.532 kb on - strand, within ABZR87_RS18670 at 542.532 kb on - strand, within ABZR87_RS18670 at 542.755 kb on + strand, within ABZR87_RS18670 at 542.837 kb on + strand, within ABZR87_RS18670 at 542.837 kb on + strand, within ABZR87_RS18670 at 542.837 kb on + strand, within ABZR87_RS18670 at 542.846 kb on + strand, within ABZR87_RS18670 at 542.884 kb on + strand, within ABZR87_RS18670 at 543.059 kb on + strand at 543.060 kb on - strand at 543.188 kb on - strand at 543.266 kb on + strand, within ABZR87_RS18675 at 543.266 kb on + strand, within ABZR87_RS18675 at 543.267 kb on - strand, within ABZR87_RS18675 at 543.370 kb on - strand, within ABZR87_RS18675 at 543.406 kb on - strand, within ABZR87_RS18675 at 543.412 kb on + strand, within ABZR87_RS18675 at 543.412 kb on + strand, within ABZR87_RS18675 at 543.413 kb on - strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.414 kb on + strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.415 kb on - strand, within ABZR87_RS18675 at 543.433 kb on + strand, within ABZR87_RS18675 at 543.433 kb on + strand, within ABZR87_RS18675 at 543.433 kb on + strand, within ABZR87_RS18675 at 543.434 kb on - strand, within ABZR87_RS18675 at 543.434 kb on - strand, within ABZR87_RS18675 at 543.717 kb on - strand, within ABZR87_RS18675 at 543.717 kb on - strand, within ABZR87_RS18675 at 543.825 kb on + strand at 543.977 kb on + strand, within ABZR87_RS18680
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 541,001 + ABZR87_RS18665 0.33 +0.5 541,092 + ABZR87_RS18665 0.40 +0.7 541,092 + ABZR87_RS18665 0.40 +1.3 541,092 + ABZR87_RS18665 0.40 +0.3 541,092 + ABZR87_RS18665 0.40 -0.3 541,092 + ABZR87_RS18665 0.40 -0.0 541,093 - ABZR87_RS18665 0.40 +1.0 541,093 - ABZR87_RS18665 0.40 +0.4 541,093 - ABZR87_RS18665 0.40 +0.3 541,093 - ABZR87_RS18665 0.40 +1.1 541,093 - ABZR87_RS18665 0.40 +1.0 541,093 - ABZR87_RS18665 0.40 +1.2 541,517 + ABZR87_RS18665 0.70 -0.1 541,518 - ABZR87_RS18665 0.70 +0.3 541,518 - ABZR87_RS18665 0.70 -1.0 541,595 + ABZR87_RS18665 0.75 +0.3 541,595 + ABZR87_RS18665 0.75 +0.1 541,595 + ABZR87_RS18665 0.75 +0.0 541,595 + ABZR87_RS18665 0.75 +1.0 541,596 - ABZR87_RS18665 0.75 -0.8 541,596 - ABZR87_RS18665 0.75 -0.1 541,598 + ABZR87_RS18665 0.76 +0.3 541,718 + ABZR87_RS18665 0.84 +0.5 541,718 + ABZR87_RS18665 0.84 +1.1 541,719 - ABZR87_RS18665 0.84 +0.8 541,758 - ABZR87_RS18665 0.87 +0.5 541,826 - +1.0 541,868 + +0.7 541,868 + +0.6 541,868 + +0.1 541,869 - +0.6 542,168 + ABZR87_RS18670 0.17 +1.0 542,168 + ABZR87_RS18670 0.17 -0.1 542,169 - ABZR87_RS18670 0.17 +0.8 542,432 + ABZR87_RS18670 0.41 -1.9 542,432 + ABZR87_RS18670 0.41 -0.7 542,432 + ABZR87_RS18670 0.41 +1.3 542,433 - ABZR87_RS18670 0.41 -1.7 542,433 - ABZR87_RS18670 0.41 +0.2 542,531 + ABZR87_RS18670 0.49 -0.8 542,531 + ABZR87_RS18670 0.49 +1.3 542,531 + ABZR87_RS18670 0.49 +0.2 542,531 + ABZR87_RS18670 0.49 +0.3 542,532 - ABZR87_RS18670 0.50 -1.0 542,532 - ABZR87_RS18670 0.50 -0.2 542,532 - ABZR87_RS18670 0.50 +1.8 542,755 + ABZR87_RS18670 0.69 +0.9 542,837 + ABZR87_RS18670 0.77 -0.6 542,837 + ABZR87_RS18670 0.77 +1.3 542,837 + ABZR87_RS18670 0.77 -0.4 542,846 + ABZR87_RS18670 0.78 +1.1 542,884 + ABZR87_RS18670 0.81 +0.4 543,059 + -1.4 543,060 - -0.2 543,188 - +1.5 543,266 + ABZR87_RS18675 0.19 -0.4 543,266 + ABZR87_RS18675 0.19 -1.2 543,267 - ABZR87_RS18675 0.19 -0.5 543,370 - ABZR87_RS18675 0.33 -1.3 543,406 - ABZR87_RS18675 0.38 -0.2 543,412 + ABZR87_RS18675 0.39 +2.0 543,412 + ABZR87_RS18675 0.39 +1.6 543,413 - ABZR87_RS18675 0.39 +0.4 543,414 + ABZR87_RS18675 0.39 -1.6 543,414 + ABZR87_RS18675 0.39 -0.5 543,414 + ABZR87_RS18675 0.39 -0.0 543,414 + ABZR87_RS18675 0.39 -0.5 543,414 + ABZR87_RS18675 0.39 -1.2 543,414 + ABZR87_RS18675 0.39 +0.7 543,414 + ABZR87_RS18675 0.39 -1.1 543,414 + ABZR87_RS18675 0.39 +1.0 543,414 + ABZR87_RS18675 0.39 +0.4 543,415 - ABZR87_RS18675 0.40 -0.0 543,415 - ABZR87_RS18675 0.40 +0.3 543,415 - ABZR87_RS18675 0.40 +0.1 543,415 - ABZR87_RS18675 0.40 -1.4 543,415 - ABZR87_RS18675 0.40 +0.3 543,433 + ABZR87_RS18675 0.42 -0.1 543,433 + ABZR87_RS18675 0.42 -1.0 543,433 + ABZR87_RS18675 0.42 +1.4 543,434 - ABZR87_RS18675 0.42 +0.8 543,434 - ABZR87_RS18675 0.42 -0.6 543,717 - ABZR87_RS18675 0.82 +0.3 543,717 - ABZR87_RS18675 0.82 -0.1 543,825 + +0.5 543,977 + ABZR87_RS18680 0.16 -0.1
Or see this region's nucleotide sequence