Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18655 and ABZR87_RS18660 overlap by 4 nucleotides ABZR87_RS18660 and ABZR87_RS18665 are separated by 68 nucleotides
ABZR87_RS18655: ABZR87_RS18655 - carbohydrate kinase, at 538,005 to 538,952
_RS18655
ABZR87_RS18660: ABZR87_RS18660 - xylulokinase, at 538,949 to 540,457
_RS18660
ABZR87_RS18665: ABZR87_RS18665 - D-arabinitol 4-dehydrogenase, at 540,526 to 541,944
_RS18665
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -2
-1
0
1 at 537.949 kb on + strand at 537.949 kb on + strand at 538.235 kb on + strand, within ABZR87_RS18655 at 538.236 kb on - strand, within ABZR87_RS18655 at 538.657 kb on + strand, within ABZR87_RS18655 at 538.657 kb on + strand, within ABZR87_RS18655 at 538.658 kb on - strand, within ABZR87_RS18655 at 538.721 kb on - strand, within ABZR87_RS18655 at 538.897 kb on + strand at 539.079 kb on + strand at 539.079 kb on + strand at 539.442 kb on + strand, within ABZR87_RS18660 at 539.442 kb on + strand, within ABZR87_RS18660 at 539.443 kb on - strand, within ABZR87_RS18660 at 539.443 kb on - strand, within ABZR87_RS18660 at 539.768 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.989 kb on - strand, within ABZR87_RS18660 at 539.989 kb on - strand, within ABZR87_RS18660 at 539.989 kb on - strand, within ABZR87_RS18660 at 540.360 kb on - strand at 540.453 kb on + strand at 540.453 kb on + strand at 540.453 kb on + strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.527 kb on + strand at 540.650 kb on + strand at 540.725 kb on + strand, within ABZR87_RS18665 at 540.725 kb on + strand, within ABZR87_RS18665 at 540.726 kb on - strand, within ABZR87_RS18665 at 540.936 kb on - strand, within ABZR87_RS18665 at 541.001 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 537,949 + -0.0 537,949 + -0.2 538,235 + ABZR87_RS18655 0.24 -0.5 538,236 - ABZR87_RS18655 0.24 +0.6 538,657 + ABZR87_RS18655 0.69 +1.3 538,657 + ABZR87_RS18655 0.69 -0.3 538,658 - ABZR87_RS18655 0.69 -1.0 538,721 - ABZR87_RS18655 0.76 +1.5 538,897 + -0.2 539,079 + -0.1 539,079 + +0.4 539,442 + ABZR87_RS18660 0.33 -0.0 539,442 + ABZR87_RS18660 0.33 -2.0 539,443 - ABZR87_RS18660 0.33 +0.1 539,443 - ABZR87_RS18660 0.33 -2.0 539,768 + ABZR87_RS18660 0.54 -0.5 539,905 + ABZR87_RS18660 0.63 +1.2 539,905 + ABZR87_RS18660 0.63 -0.2 539,905 + ABZR87_RS18660 0.63 -2.1 539,905 + ABZR87_RS18660 0.63 -2.5 539,905 + ABZR87_RS18660 0.63 -0.3 539,906 - ABZR87_RS18660 0.63 -0.5 539,906 - ABZR87_RS18660 0.63 +0.3 539,906 - ABZR87_RS18660 0.63 +0.1 539,906 - ABZR87_RS18660 0.63 +0.6 539,989 - ABZR87_RS18660 0.69 -2.3 539,989 - ABZR87_RS18660 0.69 -0.5 539,989 - ABZR87_RS18660 0.69 +1.0 540,360 - -0.6 540,453 + -0.1 540,453 + +0.2 540,453 + +0.0 540,454 - -0.2 540,454 - +0.1 540,454 - +0.9 540,454 - -0.2 540,454 - +0.0 540,527 + +0.0 540,650 + +0.9 540,725 + ABZR87_RS18665 0.14 -0.3 540,725 + ABZR87_RS18665 0.14 +0.5 540,726 - ABZR87_RS18665 0.14 +0.2 540,936 - ABZR87_RS18665 0.29 +0.1 541,001 + ABZR87_RS18665 0.33 +0.5 541,092 + ABZR87_RS18665 0.40 +0.7 541,092 + ABZR87_RS18665 0.40 +1.3 541,092 + ABZR87_RS18665 0.40 +0.3 541,092 + ABZR87_RS18665 0.40 -0.3 541,092 + ABZR87_RS18665 0.40 -0.0 541,093 - ABZR87_RS18665 0.40 +1.0 541,093 - ABZR87_RS18665 0.40 +0.4 541,093 - ABZR87_RS18665 0.40 +0.3 541,093 - ABZR87_RS18665 0.40 +1.1 541,093 - ABZR87_RS18665 0.40 +1.0 541,093 - ABZR87_RS18665 0.40 +1.2
Or see this region's nucleotide sequence