Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotides ABZR87_RS18460 and ABZR87_RS18465 are separated by 12 nucleotides ABZR87_RS18465 and ABZR87_RS18470 are separated by 37 nucleotides ABZR87_RS18470 and ABZR87_RS18475 are separated by 189 nucleotides
ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477
_RS18455
ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944
_RS18460
ABZR87_RS18465: ABZR87_RS18465 - YdeI/OmpD-associated family protein, at 501,957 to 502,526
_RS18465
ABZR87_RS18470: ABZR87_RS18470 - lipocalin-like domain-containing protein, at 502,564 to 502,989
_RS18470
ABZR87_RS18475: ABZR87_RS18475 - recombination-associated protein RdgC, at 503,179 to 504,102
_RS18475
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2 at 501.175 kb on + strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.305 kb on - strand, within ABZR87_RS18455 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.848 kb on - strand, within ABZR87_RS18460 at 501.897 kb on + strand, within ABZR87_RS18460 at 501.898 kb on - strand, within ABZR87_RS18460 at 501.943 kb on - strand at 502.080 kb on + strand, within ABZR87_RS18465 at 502.080 kb on + strand, within ABZR87_RS18465 at 502.168 kb on + strand, within ABZR87_RS18465 at 502.169 kb on - strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.325 kb on - strand, within ABZR87_RS18465 at 502.366 kb on + strand, within ABZR87_RS18465 at 502.367 kb on - strand, within ABZR87_RS18465 at 502.396 kb on + strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465 at 502.585 kb on + strand at 502.585 kb on + strand at 502.586 kb on - strand at 502.670 kb on + strand, within ABZR87_RS18470 at 502.671 kb on - strand, within ABZR87_RS18470 at 502.764 kb on + strand, within ABZR87_RS18470 at 502.764 kb on + strand, within ABZR87_RS18470 at 502.764 kb on + strand, within ABZR87_RS18470 at 502.765 kb on - strand, within ABZR87_RS18470 at 502.766 kb on + strand, within ABZR87_RS18470 at 502.767 kb on - strand, within ABZR87_RS18470 at 502.780 kb on - strand, within ABZR87_RS18470 at 502.810 kb on - strand, within ABZR87_RS18470 at 502.810 kb on - strand, within ABZR87_RS18470 at 502.989 kb on + strand at 502.989 kb on + strand at 502.990 kb on - strand at 502.990 kb on - strand at 502.990 kb on - strand at 502.990 kb on - strand at 503.065 kb on - strand at 503.065 kb on - strand at 503.065 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.068 kb on - strand at 503.070 kb on + strand at 503.129 kb on + strand at 503.151 kb on + strand at 503.172 kb on + strand at 503.288 kb on + strand, within ABZR87_RS18475 at 503.288 kb on + strand, within ABZR87_RS18475 at 503.289 kb on - strand, within ABZR87_RS18475
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 501,175 + ABZR87_RS18455 0.64 -0.6 501,293 - ABZR87_RS18455 0.78 -0.8 501,293 - ABZR87_RS18455 0.78 +0.9 501,304 + ABZR87_RS18455 0.79 +0.3 501,304 + ABZR87_RS18455 0.79 -0.7 501,305 - ABZR87_RS18455 0.79 +0.1 501,745 - ABZR87_RS18460 0.55 -0.9 501,745 - ABZR87_RS18460 0.55 -0.2 501,745 - ABZR87_RS18460 0.55 -1.0 501,750 + ABZR87_RS18460 0.56 +0.1 501,750 + ABZR87_RS18460 0.56 -0.6 501,751 - ABZR87_RS18460 0.56 -0.4 501,751 - ABZR87_RS18460 0.56 +0.1 501,803 + ABZR87_RS18460 0.68 -1.3 501,803 + ABZR87_RS18460 0.68 -0.2 501,803 + ABZR87_RS18460 0.68 +0.8 501,803 + ABZR87_RS18460 0.68 -0.1 501,803 + ABZR87_RS18460 0.68 -0.5 501,803 + ABZR87_RS18460 0.68 +0.2 501,803 + ABZR87_RS18460 0.68 -0.3 501,804 - ABZR87_RS18460 0.68 +0.1 501,804 - ABZR87_RS18460 0.68 +0.4 501,804 - ABZR87_RS18460 0.68 -0.1 501,804 - ABZR87_RS18460 0.68 +0.9 501,804 - ABZR87_RS18460 0.68 +0.2 501,804 - ABZR87_RS18460 0.68 -0.6 501,804 - ABZR87_RS18460 0.68 -0.2 501,847 + ABZR87_RS18460 0.78 -0.0 501,847 + ABZR87_RS18460 0.78 +0.3 501,847 + ABZR87_RS18460 0.78 +0.3 501,848 - ABZR87_RS18460 0.78 +2.0 501,897 + ABZR87_RS18460 0.89 -0.9 501,898 - ABZR87_RS18460 0.89 -0.0 501,943 - +1.0 502,080 + ABZR87_RS18465 0.22 -1.8 502,080 + ABZR87_RS18465 0.22 +0.8 502,168 + ABZR87_RS18465 0.37 -1.3 502,169 - ABZR87_RS18465 0.37 -0.0 502,324 + ABZR87_RS18465 0.64 -0.8 502,324 + ABZR87_RS18465 0.64 +0.5 502,325 - ABZR87_RS18465 0.65 -2.3 502,366 + ABZR87_RS18465 0.72 -1.7 502,367 - ABZR87_RS18465 0.72 -0.1 502,396 + ABZR87_RS18465 0.77 -1.9 502,397 - ABZR87_RS18465 0.77 -0.7 502,397 - ABZR87_RS18465 0.77 +0.4 502,585 + -1.8 502,585 + -0.4 502,586 - +0.0 502,670 + ABZR87_RS18470 0.25 +0.8 502,671 - ABZR87_RS18470 0.25 -0.6 502,764 + ABZR87_RS18470 0.47 +0.0 502,764 + ABZR87_RS18470 0.47 +0.1 502,764 + ABZR87_RS18470 0.47 +0.7 502,765 - ABZR87_RS18470 0.47 -0.7 502,766 + ABZR87_RS18470 0.47 -0.6 502,767 - ABZR87_RS18470 0.48 +0.4 502,780 - ABZR87_RS18470 0.51 -0.8 502,810 - ABZR87_RS18470 0.58 -1.6 502,810 - ABZR87_RS18470 0.58 -0.0 502,989 + -0.7 502,989 + +1.1 502,990 - -0.9 502,990 - -0.3 502,990 - -0.3 502,990 - -0.2 503,065 - -0.4 503,065 - +0.1 503,065 - -0.6 503,068 - +0.8 503,068 - +0.6 503,068 - -0.5 503,068 - +0.2 503,068 - -0.0 503,070 + -0.6 503,129 + -0.4 503,151 + -1.2 503,172 + -0.9 503,288 + ABZR87_RS18475 0.12 +0.8 503,288 + ABZR87_RS18475 0.12 -1.6 503,289 - ABZR87_RS18475 0.12 -0.7
Or see this region's nucleotide sequence