Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18450 and ABZR87_RS18455 overlap by 8 nucleotides ABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotides ABZR87_RS18460 and ABZR87_RS18465 are separated by 12 nucleotides
ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651
_RS18450
ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477
_RS18455
ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944
_RS18460
ABZR87_RS18465: ABZR87_RS18465 - YdeI/OmpD-associated family protein, at 501,957 to 502,526
_RS18465
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 499.716 kb on + strand, within ABZR87_RS18450 at 499.717 kb on - strand, within ABZR87_RS18450 at 499.753 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.939 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.055 kb on + strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.071 kb on - strand, within ABZR87_RS18450 at 500.130 kb on + strand, within ABZR87_RS18450 at 500.131 kb on - strand, within ABZR87_RS18450 at 500.626 kb on - strand at 500.626 kb on - strand at 500.657 kb on - strand at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 501.175 kb on + strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.305 kb on - strand, within ABZR87_RS18455 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.848 kb on - strand, within ABZR87_RS18460 at 501.897 kb on + strand, within ABZR87_RS18460 at 501.898 kb on - strand, within ABZR87_RS18460 at 501.943 kb on - strand at 502.080 kb on + strand, within ABZR87_RS18465 at 502.080 kb on + strand, within ABZR87_RS18465 at 502.168 kb on + strand, within ABZR87_RS18465 at 502.169 kb on - strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.325 kb on - strand, within ABZR87_RS18465 at 502.366 kb on + strand, within ABZR87_RS18465 at 502.367 kb on - strand, within ABZR87_RS18465 at 502.396 kb on + strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 499,716 + ABZR87_RS18450 0.24 +0.3 499,717 - ABZR87_RS18450 0.24 -2.7 499,753 - ABZR87_RS18450 0.27 +0.5 499,789 - ABZR87_RS18450 0.30 +0.5 499,789 - ABZR87_RS18450 0.30 +1.0 499,938 + ABZR87_RS18450 0.42 +0.7 499,938 + ABZR87_RS18450 0.42 +0.5 499,938 + ABZR87_RS18450 0.42 -0.6 499,938 + ABZR87_RS18450 0.42 -0.5 499,939 - ABZR87_RS18450 0.42 -0.4 500,029 - ABZR87_RS18450 0.49 -0.1 500,029 - ABZR87_RS18450 0.49 -1.6 500,055 + ABZR87_RS18450 0.51 +0.1 500,056 - ABZR87_RS18450 0.51 +0.9 500,056 - ABZR87_RS18450 0.51 -1.9 500,070 + ABZR87_RS18450 0.53 -0.7 500,070 + ABZR87_RS18450 0.53 +0.2 500,070 + ABZR87_RS18450 0.53 +0.8 500,071 - ABZR87_RS18450 0.53 -0.3 500,130 + ABZR87_RS18450 0.57 +0.2 500,131 - ABZR87_RS18450 0.58 +0.9 500,626 - +0.2 500,626 - +0.2 500,657 - +0.3 500,743 + ABZR87_RS18455 0.12 -0.7 500,743 + ABZR87_RS18455 0.12 -0.7 500,743 + ABZR87_RS18455 0.12 -0.9 500,744 - ABZR87_RS18455 0.12 -0.4 500,744 - ABZR87_RS18455 0.12 -0.9 501,175 + ABZR87_RS18455 0.64 -0.6 501,293 - ABZR87_RS18455 0.78 -0.8 501,293 - ABZR87_RS18455 0.78 +0.9 501,304 + ABZR87_RS18455 0.79 +0.3 501,304 + ABZR87_RS18455 0.79 -0.7 501,305 - ABZR87_RS18455 0.79 +0.1 501,745 - ABZR87_RS18460 0.55 -0.9 501,745 - ABZR87_RS18460 0.55 -0.2 501,745 - ABZR87_RS18460 0.55 -1.0 501,750 + ABZR87_RS18460 0.56 +0.1 501,750 + ABZR87_RS18460 0.56 -0.6 501,751 - ABZR87_RS18460 0.56 -0.4 501,751 - ABZR87_RS18460 0.56 +0.1 501,803 + ABZR87_RS18460 0.68 -1.3 501,803 + ABZR87_RS18460 0.68 -0.2 501,803 + ABZR87_RS18460 0.68 +0.8 501,803 + ABZR87_RS18460 0.68 -0.1 501,803 + ABZR87_RS18460 0.68 -0.5 501,803 + ABZR87_RS18460 0.68 +0.2 501,803 + ABZR87_RS18460 0.68 -0.3 501,804 - ABZR87_RS18460 0.68 +0.1 501,804 - ABZR87_RS18460 0.68 +0.4 501,804 - ABZR87_RS18460 0.68 -0.1 501,804 - ABZR87_RS18460 0.68 +0.9 501,804 - ABZR87_RS18460 0.68 +0.2 501,804 - ABZR87_RS18460 0.68 -0.6 501,804 - ABZR87_RS18460 0.68 -0.2 501,847 + ABZR87_RS18460 0.78 -0.0 501,847 + ABZR87_RS18460 0.78 +0.3 501,847 + ABZR87_RS18460 0.78 +0.3 501,848 - ABZR87_RS18460 0.78 +2.0 501,897 + ABZR87_RS18460 0.89 -0.9 501,898 - ABZR87_RS18460 0.89 -0.0 501,943 - +1.0 502,080 + ABZR87_RS18465 0.22 -1.8 502,080 + ABZR87_RS18465 0.22 +0.8 502,168 + ABZR87_RS18465 0.37 -1.3 502,169 - ABZR87_RS18465 0.37 -0.0 502,324 + ABZR87_RS18465 0.64 -0.8 502,324 + ABZR87_RS18465 0.64 +0.5 502,325 - ABZR87_RS18465 0.65 -2.3 502,366 + ABZR87_RS18465 0.72 -1.7 502,367 - ABZR87_RS18465 0.72 -0.1 502,396 + ABZR87_RS18465 0.77 -1.9 502,397 - ABZR87_RS18465 0.77 -0.7 502,397 - ABZR87_RS18465 0.77 +0.4
Or see this region's nucleotide sequence