Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18170

Experiment: Dictyostellum sp.mixed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS18160 and ABZR87_RS18165 are separated by 19 nucleotidesABZR87_RS18165 and ABZR87_RS18170 are separated by 8 nucleotidesABZR87_RS18170 and ABZR87_RS18175 overlap by 4 nucleotides ABZR87_RS18160: ABZR87_RS18160 - hypothetical protein, at 437,668 to 439,149 _RS18160 ABZR87_RS18165: ABZR87_RS18165 - hypothetical protein, at 439,169 to 439,582 _RS18165 ABZR87_RS18170: ABZR87_RS18170 - hypothetical protein, at 439,591 to 439,866 _RS18170 ABZR87_RS18175: ABZR87_RS18175 - formyltetrahydrofolate deformylase, at 439,863 to 440,825 _RS18175 Position (kb) 439 440Strain fitness (log2 ratio) -1 0 1at 438.656 kb on - strand, within ABZR87_RS18160at 438.656 kb on - strand, within ABZR87_RS18160at 438.664 kb on + strand, within ABZR87_RS18160at 438.665 kb on - strand, within ABZR87_RS18160at 438.665 kb on - strand, within ABZR87_RS18160at 438.713 kb on + strand, within ABZR87_RS18160at 438.713 kb on + strand, within ABZR87_RS18160at 438.743 kb on - strand, within ABZR87_RS18160at 439.079 kb on - strandat 439.079 kb on - strandat 439.162 kb on - strandat 439.263 kb on + strand, within ABZR87_RS18165at 439.264 kb on - strand, within ABZR87_RS18165at 439.497 kb on + strand, within ABZR87_RS18165at 439.653 kb on - strand, within ABZR87_RS18170at 440.086 kb on + strand, within ABZR87_RS18175at 440.086 kb on + strand, within ABZR87_RS18175at 440.086 kb on + strand, within ABZR87_RS18175at 440.087 kb on - strand, within ABZR87_RS18175at 440.107 kb on + strand, within ABZR87_RS18175at 440.107 kb on + strand, within ABZR87_RS18175at 440.108 kb on - strand, within ABZR87_RS18175at 440.287 kb on - strand, within ABZR87_RS18175at 440.331 kb on + strand, within ABZR87_RS18175at 440.331 kb on + strand, within ABZR87_RS18175at 440.331 kb on + strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.332 kb on - strand, within ABZR87_RS18175at 440.563 kb on + strand, within ABZR87_RS18175at 440.563 kb on + strand, within ABZR87_RS18175at 440.701 kb on + strand, within ABZR87_RS18175at 440.701 kb on + strand, within ABZR87_RS18175at 440.701 kb on + strand, within ABZR87_RS18175at 440.701 kb on + strand, within ABZR87_RS18175at 440.702 kb on - strand, within ABZR87_RS18175at 440.702 kb on - strand, within ABZR87_RS18175at 440.702 kb on - strand, within ABZR87_RS18175at 440.702 kb on - strand, within ABZR87_RS18175at 440.714 kb on + strand, within ABZR87_RS18175at 440.732 kb on + strandat 440.733 kb on - strandat 440.733 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
remove
438,656 - ABZR87_RS18160 0.67 +0.1
438,656 - ABZR87_RS18160 0.67 +0.1
438,664 + ABZR87_RS18160 0.67 -0.1
438,665 - ABZR87_RS18160 0.67 -0.3
438,665 - ABZR87_RS18160 0.67 +0.8
438,713 + ABZR87_RS18160 0.71 -1.4
438,713 + ABZR87_RS18160 0.71 +0.3
438,743 - ABZR87_RS18160 0.73 -0.1
439,079 - +0.5
439,079 - -1.4
439,162 - +0.7
439,263 + ABZR87_RS18165 0.23 -0.0
439,264 - ABZR87_RS18165 0.23 +0.9
439,497 + ABZR87_RS18165 0.79 -0.4
439,653 - ABZR87_RS18170 0.22 -0.7
440,086 + ABZR87_RS18175 0.23 +0.8
440,086 + ABZR87_RS18175 0.23 -1.5
440,086 + ABZR87_RS18175 0.23 -0.3
440,087 - ABZR87_RS18175 0.23 +0.2
440,107 + ABZR87_RS18175 0.25 +1.1
440,107 + ABZR87_RS18175 0.25 -0.6
440,108 - ABZR87_RS18175 0.25 +1.2
440,287 - ABZR87_RS18175 0.44 -0.0
440,331 + ABZR87_RS18175 0.49 +0.4
440,331 + ABZR87_RS18175 0.49 -0.1
440,331 + ABZR87_RS18175 0.49 -1.3
440,332 - ABZR87_RS18175 0.49 +1.1
440,332 - ABZR87_RS18175 0.49 -0.2
440,332 - ABZR87_RS18175 0.49 -0.2
440,332 - ABZR87_RS18175 0.49 -0.8
440,332 - ABZR87_RS18175 0.49 -0.2
440,332 - ABZR87_RS18175 0.49 -0.2
440,332 - ABZR87_RS18175 0.49 -0.5
440,332 - ABZR87_RS18175 0.49 -1.3
440,563 + ABZR87_RS18175 0.73 +0.3
440,563 + ABZR87_RS18175 0.73 -0.9
440,701 + ABZR87_RS18175 0.87 +0.4
440,701 + ABZR87_RS18175 0.87 -1.6
440,701 + ABZR87_RS18175 0.87 -1.3
440,701 + ABZR87_RS18175 0.87 +0.3
440,702 - ABZR87_RS18175 0.87 -0.6
440,702 - ABZR87_RS18175 0.87 -0.2
440,702 - ABZR87_RS18175 0.87 -0.2
440,702 - ABZR87_RS18175 0.87 -0.3
440,714 + ABZR87_RS18175 0.88 -0.2
440,732 + +0.1
440,733 - +1.0
440,733 - -0.3

Or see this region's nucleotide sequence