Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17690 and ABZR87_RS17695 are separated by 114 nucleotides ABZR87_RS17695 and ABZR87_RS17700 are separated by 17 nucleotides ABZR87_RS17700 and ABZR87_RS17705 are separated by 135 nucleotides ABZR87_RS17705 and ABZR87_RS17710 are separated by 29 nucleotides
ABZR87_RS17690: ABZR87_RS17690 - multidrug/biocide efflux PACE transporter, at 334,444 to 334,881
_RS17690
ABZR87_RS17695: ABZR87_RS17695 - helix-turn-helix transcriptional regulator, at 334,996 to 335,634
_RS17695
ABZR87_RS17700: ABZR87_RS17700 - DUF1059 domain-containing protein, at 335,652 to 335,870
_RS17700
ABZR87_RS17705: ABZR87_RS17705 - DUF3455 domain-containing protein, at 336,006 to 336,536
_RS17705
ABZR87_RS17710: ABZR87_RS17710 - DUF488 family protein, at 336,566 to 336,964
_RS17710
Position (kb) 335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.895 kb on + strand at 334.896 kb on - strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.935 kb on + strand at 334.935 kb on + strand at 334.936 kb on - strand at 334.936 kb on - strand at 334.986 kb on + strand at 334.987 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.285 kb on - strand, within ABZR87_RS17695 at 335.563 kb on + strand, within ABZR87_RS17695 at 335.632 kb on + strand at 335.632 kb on + strand at 335.857 kb on + strand at 335.858 kb on - strand at 335.940 kb on + strand at 335.942 kb on + strand at 335.973 kb on + strand at 335.974 kb on - strand at 335.974 kb on - strand at 336.072 kb on + strand, within ABZR87_RS17705 at 336.172 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.645 kb on + strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 334,810 + ABZR87_RS17690 0.84 +0.9 334,810 + ABZR87_RS17690 0.84 -0.8 334,834 + ABZR87_RS17690 0.89 +0.5 334,834 + ABZR87_RS17690 0.89 +1.2 334,835 - ABZR87_RS17690 0.89 +0.7 334,835 - ABZR87_RS17690 0.89 -0.1 334,895 + +0.6 334,896 - -0.7 334,933 + +1.1 334,933 + -0.9 334,933 + -0.0 334,934 - -0.4 334,934 - +0.9 334,934 - -0.2 334,934 - -0.7 334,934 - +0.1 334,934 - -0.6 334,934 - +2.2 334,935 + -0.6 334,935 + -0.6 334,936 - -0.7 334,936 - -0.4 334,986 + +0.3 334,987 - -0.4 335,014 - +0.8 335,014 - +0.0 335,014 - -0.0 335,053 + -0.6 335,053 + -0.5 335,053 + -1.7 335,053 + +0.2 335,053 + -0.6 335,054 - -0.1 335,054 - +0.2 335,054 - -0.5 335,054 - +0.4 335,054 - -0.3 335,285 - ABZR87_RS17695 0.45 +0.6 335,563 + ABZR87_RS17695 0.89 +0.6 335,632 + -0.2 335,632 + +0.3 335,857 + -0.1 335,858 - -0.3 335,940 + +0.1 335,942 + -0.3 335,973 + -0.4 335,974 - -0.1 335,974 - -0.6 336,072 + ABZR87_RS17705 0.12 -3.1 336,172 - ABZR87_RS17705 0.31 +1.2 336,302 - ABZR87_RS17705 0.56 -0.3 336,302 - ABZR87_RS17705 0.56 +0.4 336,302 - ABZR87_RS17705 0.56 -2.9 336,345 - ABZR87_RS17705 0.64 -2.7 336,345 - ABZR87_RS17705 0.64 +0.2 336,367 + ABZR87_RS17705 0.68 -0.7 336,367 + ABZR87_RS17705 0.68 +0.1 336,367 + ABZR87_RS17705 0.68 -0.8 336,367 + ABZR87_RS17705 0.68 +1.7 336,367 + ABZR87_RS17705 0.68 -0.3 336,367 + ABZR87_RS17705 0.68 -0.2 336,367 + ABZR87_RS17705 0.68 -0.7 336,368 - ABZR87_RS17705 0.68 -0.7 336,368 - ABZR87_RS17705 0.68 +0.2 336,645 + ABZR87_RS17710 0.20 +0.5 336,646 - ABZR87_RS17710 0.20 -0.0 336,646 - ABZR87_RS17710 0.20 +0.2 336,646 - ABZR87_RS17710 0.20 -2.7 336,844 - ABZR87_RS17710 0.70 -0.5 336,844 - ABZR87_RS17710 0.70 +0.1
Or see this region's nucleotide sequence