Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17685 and ABZR87_RS17690 are separated by 115 nucleotides ABZR87_RS17690 and ABZR87_RS17695 are separated by 114 nucleotides ABZR87_RS17695 and ABZR87_RS17700 are separated by 17 nucleotides
ABZR87_RS17685: ABZR87_RS17685 - LysR family transcriptional regulator, at 333,444 to 334,328
_RS17685
ABZR87_RS17690: ABZR87_RS17690 - multidrug/biocide efflux PACE transporter, at 334,444 to 334,881
_RS17690
ABZR87_RS17695: ABZR87_RS17695 - helix-turn-helix transcriptional regulator, at 334,996 to 335,634
_RS17695
ABZR87_RS17700: ABZR87_RS17700 - DUF1059 domain-containing protein, at 335,652 to 335,870
_RS17700
Position (kb) 334
335 Strain fitness (log2 ratio) -1
0
1
2 at 333.510 kb on + strand at 333.511 kb on - strand at 333.511 kb on - strand at 333.649 kb on + strand, within ABZR87_RS17685 at 333.650 kb on - strand, within ABZR87_RS17685 at 333.756 kb on + strand, within ABZR87_RS17685 at 333.869 kb on - strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.284 kb on - strand at 334.305 kb on + strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.360 kb on + strand at 334.381 kb on - strand at 334.405 kb on - strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.455 kb on - strand at 334.455 kb on - strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.481 kb on + strand at 334.482 kb on - strand at 334.482 kb on - strand at 334.534 kb on - strand, within ABZR87_RS17690 at 334.534 kb on - strand, within ABZR87_RS17690 at 334.651 kb on + strand, within ABZR87_RS17690 at 334.651 kb on + strand, within ABZR87_RS17690 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.810 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.834 kb on + strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.835 kb on - strand, within ABZR87_RS17690 at 334.895 kb on + strand at 334.896 kb on - strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.933 kb on + strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.934 kb on - strand at 334.935 kb on + strand at 334.935 kb on + strand at 334.936 kb on - strand at 334.936 kb on - strand at 334.986 kb on + strand at 334.987 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.014 kb on - strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.053 kb on + strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.054 kb on - strand at 335.285 kb on - strand, within ABZR87_RS17695 at 335.563 kb on + strand, within ABZR87_RS17695 at 335.632 kb on + strand at 335.632 kb on + strand at 335.857 kb on + strand at 335.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 333,510 + +0.6 333,511 - -1.4 333,511 - -0.1 333,649 + ABZR87_RS17685 0.23 -0.7 333,650 - ABZR87_RS17685 0.23 -0.0 333,756 + ABZR87_RS17685 0.35 +0.2 333,869 - ABZR87_RS17685 0.48 -0.4 334,006 + ABZR87_RS17685 0.64 +0.1 334,006 + ABZR87_RS17685 0.64 -0.7 334,021 + ABZR87_RS17685 0.65 -0.7 334,021 + ABZR87_RS17685 0.65 +0.3 334,021 + ABZR87_RS17685 0.65 -1.2 334,021 + ABZR87_RS17685 0.65 -0.3 334,021 + ABZR87_RS17685 0.65 -0.1 334,022 - ABZR87_RS17685 0.65 -0.0 334,022 - ABZR87_RS17685 0.65 -0.1 334,022 - ABZR87_RS17685 0.65 -0.5 334,284 - -0.4 334,305 + +0.0 334,306 - -0.4 334,306 - +0.8 334,306 - +0.1 334,360 + -1.2 334,381 - -0.0 334,405 - +0.2 334,436 + +0.1 334,436 + +2.6 334,436 + +0.1 334,436 + -0.7 334,436 + -0.3 334,436 + -0.9 334,436 + -0.8 334,437 - +0.2 334,437 - -0.5 334,437 - +0.7 334,437 - -0.5 334,437 - +1.9 334,437 - +0.2 334,437 - -0.7 334,437 - -1.0 334,438 + -0.3 334,438 + +0.8 334,438 + +0.5 334,438 + -0.2 334,438 + -0.3 334,439 - +0.4 334,439 - +2.0 334,439 - -0.1 334,439 - +0.2 334,455 - -0.9 334,455 - -0.4 334,481 + +1.0 334,481 + +0.2 334,481 + -0.9 334,481 + -0.3 334,481 + +0.6 334,482 - -0.0 334,482 - +0.2 334,534 - ABZR87_RS17690 0.21 +0.3 334,534 - ABZR87_RS17690 0.21 +0.5 334,651 + ABZR87_RS17690 0.47 -0.8 334,651 + ABZR87_RS17690 0.47 -0.2 334,810 + ABZR87_RS17690 0.84 +0.9 334,810 + ABZR87_RS17690 0.84 -0.8 334,834 + ABZR87_RS17690 0.89 +0.5 334,834 + ABZR87_RS17690 0.89 +1.2 334,835 - ABZR87_RS17690 0.89 +0.7 334,835 - ABZR87_RS17690 0.89 -0.1 334,895 + +0.6 334,896 - -0.7 334,933 + +1.1 334,933 + -0.9 334,933 + -0.0 334,934 - -0.4 334,934 - +0.9 334,934 - -0.2 334,934 - -0.7 334,934 - +0.1 334,934 - -0.6 334,934 - +2.2 334,935 + -0.6 334,935 + -0.6 334,936 - -0.7 334,936 - -0.4 334,986 + +0.3 334,987 - -0.4 335,014 - +0.8 335,014 - +0.0 335,014 - -0.0 335,053 + -0.6 335,053 + -0.5 335,053 + -1.7 335,053 + +0.2 335,053 + -0.6 335,054 - -0.1 335,054 - +0.2 335,054 - -0.5 335,054 - +0.4 335,054 - -0.3 335,285 - ABZR87_RS17695 0.45 +0.6 335,563 + ABZR87_RS17695 0.89 +0.6 335,632 + -0.2 335,632 + +0.3 335,857 + -0.1 335,858 - -0.3
Or see this region's nucleotide sequence