Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17670 and ABZR87_RS17675 overlap by 4 nucleotides ABZR87_RS17675 and ABZR87_RS17680 are separated by 161 nucleotides ABZR87_RS17680 and ABZR87_RS17685 are separated by 4 nucleotides
ABZR87_RS17670: ABZR87_RS17670 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 331,033 to 332,010
_RS17670
ABZR87_RS17675: ABZR87_RS17675 - RidA family protein, at 332,007 to 332,396
_RS17675
ABZR87_RS17680: ABZR87_RS17680 - flagellar brake protein, at 332,558 to 333,439
_RS17680
ABZR87_RS17685: ABZR87_RS17685 - LysR family transcriptional regulator, at 333,444 to 334,328
_RS17685
Position (kb) 332
333
334 Strain fitness (log2 ratio) -1
0
1
2 at 331.707 kb on + strand, within ABZR87_RS17670 at 331.708 kb on - strand, within ABZR87_RS17670 at 331.708 kb on - strand, within ABZR87_RS17670 at 332.022 kb on + strand at 332.022 kb on + strand at 332.061 kb on + strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.062 kb on - strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.244 kb on + strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.245 kb on - strand, within ABZR87_RS17675 at 332.353 kb on - strand, within ABZR87_RS17675 at 332.491 kb on + strand at 332.820 kb on + strand, within ABZR87_RS17680 at 332.821 kb on - strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.882 kb on + strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.883 kb on - strand, within ABZR87_RS17680 at 332.884 kb on + strand, within ABZR87_RS17680 at 332.884 kb on + strand, within ABZR87_RS17680 at 332.885 kb on - strand, within ABZR87_RS17680 at 332.885 kb on - strand, within ABZR87_RS17680 at 333.041 kb on + strand, within ABZR87_RS17680 at 333.042 kb on - strand, within ABZR87_RS17680 at 333.263 kb on + strand, within ABZR87_RS17680 at 333.264 kb on - strand, within ABZR87_RS17680 at 333.264 kb on - strand, within ABZR87_RS17680 at 333.510 kb on + strand at 333.511 kb on - strand at 333.511 kb on - strand at 333.649 kb on + strand, within ABZR87_RS17685 at 333.650 kb on - strand, within ABZR87_RS17685 at 333.756 kb on + strand, within ABZR87_RS17685 at 333.869 kb on - strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.006 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.021 kb on + strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.022 kb on - strand, within ABZR87_RS17685 at 334.284 kb on - strand at 334.305 kb on + strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.306 kb on - strand at 334.360 kb on + strand at 334.381 kb on - strand at 334.405 kb on - strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.436 kb on + strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.437 kb on - strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.438 kb on + strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand at 334.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 331,707 + ABZR87_RS17670 0.69 +0.1 331,708 - ABZR87_RS17670 0.69 +0.1 331,708 - ABZR87_RS17670 0.69 -0.6 332,022 + +0.3 332,022 + -0.3 332,061 + ABZR87_RS17675 0.14 +0.0 332,062 - ABZR87_RS17675 0.14 -0.6 332,062 - ABZR87_RS17675 0.14 -0.5 332,062 - ABZR87_RS17675 0.14 +1.0 332,062 - ABZR87_RS17675 0.14 +1.6 332,244 + ABZR87_RS17675 0.61 -0.8 332,244 + ABZR87_RS17675 0.61 +0.1 332,244 + ABZR87_RS17675 0.61 +0.1 332,245 - ABZR87_RS17675 0.61 -0.2 332,245 - ABZR87_RS17675 0.61 +0.8 332,245 - ABZR87_RS17675 0.61 +1.2 332,353 - ABZR87_RS17675 0.89 -0.5 332,491 + -0.0 332,820 + ABZR87_RS17680 0.30 -0.6 332,821 - ABZR87_RS17680 0.30 -0.3 332,882 + ABZR87_RS17680 0.37 +0.4 332,882 + ABZR87_RS17680 0.37 +0.7 332,882 + ABZR87_RS17680 0.37 -0.6 332,883 - ABZR87_RS17680 0.37 -1.2 332,883 - ABZR87_RS17680 0.37 -0.1 332,883 - ABZR87_RS17680 0.37 -0.6 332,883 - ABZR87_RS17680 0.37 +0.3 332,884 + ABZR87_RS17680 0.37 -1.0 332,884 + ABZR87_RS17680 0.37 -1.1 332,885 - ABZR87_RS17680 0.37 -0.6 332,885 - ABZR87_RS17680 0.37 +0.1 333,041 + ABZR87_RS17680 0.55 -0.0 333,042 - ABZR87_RS17680 0.55 +0.3 333,263 + ABZR87_RS17680 0.80 -0.9 333,264 - ABZR87_RS17680 0.80 -0.2 333,264 - ABZR87_RS17680 0.80 -0.1 333,510 + +0.6 333,511 - -1.4 333,511 - -0.1 333,649 + ABZR87_RS17685 0.23 -0.7 333,650 - ABZR87_RS17685 0.23 -0.0 333,756 + ABZR87_RS17685 0.35 +0.2 333,869 - ABZR87_RS17685 0.48 -0.4 334,006 + ABZR87_RS17685 0.64 +0.1 334,006 + ABZR87_RS17685 0.64 -0.7 334,021 + ABZR87_RS17685 0.65 -0.7 334,021 + ABZR87_RS17685 0.65 +0.3 334,021 + ABZR87_RS17685 0.65 -1.2 334,021 + ABZR87_RS17685 0.65 -0.3 334,021 + ABZR87_RS17685 0.65 -0.1 334,022 - ABZR87_RS17685 0.65 -0.0 334,022 - ABZR87_RS17685 0.65 -0.1 334,022 - ABZR87_RS17685 0.65 -0.5 334,284 - -0.4 334,305 + +0.0 334,306 - -0.4 334,306 - +0.8 334,306 - +0.1 334,360 + -1.2 334,381 - -0.0 334,405 - +0.2 334,436 + +0.1 334,436 + +2.6 334,436 + +0.1 334,436 + -0.7 334,436 + -0.3 334,436 + -0.9 334,436 + -0.8 334,437 - +0.2 334,437 - -0.5 334,437 - +0.7 334,437 - -0.5 334,437 - +1.9 334,437 - +0.2 334,437 - -0.7 334,437 - -1.0 334,438 + -0.3 334,438 + +0.8 334,438 + +0.5 334,438 + -0.2 334,438 + -0.3 334,439 - +0.4 334,439 - +2.0 334,439 - -0.1 334,439 - +0.2
Or see this region's nucleotide sequence