Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17675

Experiment: Dictyostellum sp.mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17665 and ABZR87_RS17670 overlap by 4 nucleotidesABZR87_RS17670 and ABZR87_RS17675 overlap by 4 nucleotidesABZR87_RS17675 and ABZR87_RS17680 are separated by 161 nucleotides ABZR87_RS17665: ABZR87_RS17665 - PAS domain-containing protein, at 330,395 to 331,036 _RS17665 ABZR87_RS17670: ABZR87_RS17670 - threo-3-hydroxy-L-aspartate ammonia-lyase, at 331,033 to 332,010 _RS17670 ABZR87_RS17675: ABZR87_RS17675 - RidA family protein, at 332,007 to 332,396 _RS17675 ABZR87_RS17680: ABZR87_RS17680 - flagellar brake protein, at 332,558 to 333,439 _RS17680 Position (kb) 332 333Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 331.007 kb on + strandat 331.007 kb on + strandat 331.007 kb on + strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.008 kb on - strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.013 kb on + strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.014 kb on - strandat 331.051 kb on + strandat 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.207 kb on + strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670at 331.208 kb on - strand, within ABZR87_RS17670at 331.409 kb on - strand, within ABZR87_RS17670at 331.409 kb on - strand, within ABZR87_RS17670at 331.461 kb on + strand, within ABZR87_RS17670at 331.461 kb on + strand, within ABZR87_RS17670at 331.462 kb on - strand, within ABZR87_RS17670at 331.477 kb on + strand, within ABZR87_RS17670at 331.477 kb on + strand, within ABZR87_RS17670at 331.478 kb on - strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.553 kb on + strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.554 kb on - strand, within ABZR87_RS17670at 331.707 kb on + strand, within ABZR87_RS17670at 331.708 kb on - strand, within ABZR87_RS17670at 331.708 kb on - strand, within ABZR87_RS17670at 332.022 kb on + strandat 332.022 kb on + strandat 332.061 kb on + strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.062 kb on - strand, within ABZR87_RS17675at 332.244 kb on + strand, within ABZR87_RS17675at 332.244 kb on + strand, within ABZR87_RS17675at 332.244 kb on + strand, within ABZR87_RS17675at 332.245 kb on - strand, within ABZR87_RS17675at 332.245 kb on - strand, within ABZR87_RS17675at 332.245 kb on - strand, within ABZR87_RS17675at 332.353 kb on - strand, within ABZR87_RS17675at 332.491 kb on + strandat 332.820 kb on + strand, within ABZR87_RS17680at 332.821 kb on - strand, within ABZR87_RS17680at 332.882 kb on + strand, within ABZR87_RS17680at 332.882 kb on + strand, within ABZR87_RS17680at 332.882 kb on + strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.883 kb on - strand, within ABZR87_RS17680at 332.884 kb on + strand, within ABZR87_RS17680at 332.884 kb on + strand, within ABZR87_RS17680at 332.885 kb on - strand, within ABZR87_RS17680at 332.885 kb on - strand, within ABZR87_RS17680at 333.041 kb on + strand, within ABZR87_RS17680at 333.042 kb on - strand, within ABZR87_RS17680at 333.263 kb on + strand, within ABZR87_RS17680at 333.264 kb on - strand, within ABZR87_RS17680at 333.264 kb on - strand, within ABZR87_RS17680

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1
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331,007 + +1.4
331,007 + -0.4
331,007 + -0.3
331,008 - +0.5
331,008 - +0.3
331,008 - +0.3
331,008 - +0.3
331,013 + -0.9
331,013 + -0.1
331,013 + -0.4
331,014 - -4.0
331,014 - -0.4
331,014 - -0.7
331,014 - -0.2
331,051 + +0.2
331,207 + ABZR87_RS17670 0.18 +0.0
331,207 + ABZR87_RS17670 0.18 +0.5
331,207 + ABZR87_RS17670 0.18 -0.5
331,207 + ABZR87_RS17670 0.18 +0.1
331,208 - ABZR87_RS17670 0.18 -2.1
331,208 - ABZR87_RS17670 0.18 -0.3
331,409 - ABZR87_RS17670 0.38 +0.1
331,409 - ABZR87_RS17670 0.38 +0.1
331,461 + ABZR87_RS17670 0.44 -0.1
331,461 + ABZR87_RS17670 0.44 +0.1
331,462 - ABZR87_RS17670 0.44 +2.0
331,477 + ABZR87_RS17670 0.45 +0.1
331,477 + ABZR87_RS17670 0.45 -0.1
331,478 - ABZR87_RS17670 0.46 -0.7
331,553 + ABZR87_RS17670 0.53 -0.4
331,553 + ABZR87_RS17670 0.53 +0.0
331,553 + ABZR87_RS17670 0.53 -0.7
331,554 - ABZR87_RS17670 0.53 -1.3
331,554 - ABZR87_RS17670 0.53 +0.0
331,554 - ABZR87_RS17670 0.53 -0.7
331,554 - ABZR87_RS17670 0.53 -0.6
331,707 + ABZR87_RS17670 0.69 +0.1
331,708 - ABZR87_RS17670 0.69 +0.1
331,708 - ABZR87_RS17670 0.69 -0.6
332,022 + +0.3
332,022 + -0.3
332,061 + ABZR87_RS17675 0.14 +0.0
332,062 - ABZR87_RS17675 0.14 -0.6
332,062 - ABZR87_RS17675 0.14 -0.5
332,062 - ABZR87_RS17675 0.14 +1.0
332,062 - ABZR87_RS17675 0.14 +1.6
332,244 + ABZR87_RS17675 0.61 -0.8
332,244 + ABZR87_RS17675 0.61 +0.1
332,244 + ABZR87_RS17675 0.61 +0.1
332,245 - ABZR87_RS17675 0.61 -0.2
332,245 - ABZR87_RS17675 0.61 +0.8
332,245 - ABZR87_RS17675 0.61 +1.2
332,353 - ABZR87_RS17675 0.89 -0.5
332,491 + -0.0
332,820 + ABZR87_RS17680 0.30 -0.6
332,821 - ABZR87_RS17680 0.30 -0.3
332,882 + ABZR87_RS17680 0.37 +0.4
332,882 + ABZR87_RS17680 0.37 +0.7
332,882 + ABZR87_RS17680 0.37 -0.6
332,883 - ABZR87_RS17680 0.37 -1.2
332,883 - ABZR87_RS17680 0.37 -0.1
332,883 - ABZR87_RS17680 0.37 -0.6
332,883 - ABZR87_RS17680 0.37 +0.3
332,884 + ABZR87_RS17680 0.37 -1.0
332,884 + ABZR87_RS17680 0.37 -1.1
332,885 - ABZR87_RS17680 0.37 -0.6
332,885 - ABZR87_RS17680 0.37 +0.1
333,041 + ABZR87_RS17680 0.55 -0.0
333,042 - ABZR87_RS17680 0.55 +0.3
333,263 + ABZR87_RS17680 0.80 -0.9
333,264 - ABZR87_RS17680 0.80 -0.2
333,264 - ABZR87_RS17680 0.80 -0.1

Or see this region's nucleotide sequence