Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17410 and ABZR87_RS17415 overlap by 4 nucleotides ABZR87_RS17415 and ABZR87_RS17420 overlap by 4 nucleotides ABZR87_RS17420 and ABZR87_RS17425 are separated by 64 nucleotides
ABZR87_RS17410: ABZR87_RS17410 - GTP-binding protein, at 264,939 to 266,069
_RS17410
ABZR87_RS17415: ABZR87_RS17415 - UbiX family flavin prenyltransferase, at 266,066 to 266,707
_RS17415
ABZR87_RS17420: ABZR87_RS17420 - UbiD family decarboxylase, at 266,704 to 268,095
_RS17420
ABZR87_RS17425: ABZR87_RS17425 - amidohydrolase family protein, at 268,160 to 269,083
_RS17425
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -2
-1
0
1 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.853 kb on - strand, within ABZR87_RS17410 at 266.099 kb on - strand at 266.105 kb on + strand at 266.115 kb on - strand at 266.115 kb on - strand at 266.115 kb on - strand at 266.223 kb on + strand, within ABZR87_RS17415 at 266.223 kb on + strand, within ABZR87_RS17415 at 266.234 kb on + strand, within ABZR87_RS17415 at 266.235 kb on - strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.498 kb on - strand, within ABZR87_RS17415 at 266.498 kb on - strand, within ABZR87_RS17415 at 266.987 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.060 kb on - strand, within ABZR87_RS17420 at 267.089 kb on + strand, within ABZR87_RS17420 at 267.089 kb on + strand, within ABZR87_RS17420 at 267.394 kb on - strand, within ABZR87_RS17420 at 267.394 kb on - strand, within ABZR87_RS17420 at 267.617 kb on + strand, within ABZR87_RS17420 at 267.617 kb on + strand, within ABZR87_RS17420 at 267.618 kb on - strand, within ABZR87_RS17420 at 267.618 kb on - strand, within ABZR87_RS17420 at 267.618 kb on - strand, within ABZR87_RS17420 at 267.677 kb on + strand, within ABZR87_RS17420 at 267.678 kb on - strand, within ABZR87_RS17420 at 268.109 kb on + strand at 268.110 kb on - strand at 268.185 kb on + strand at 268.186 kb on - strand at 268.278 kb on + strand, within ABZR87_RS17425 at 268.278 kb on + strand, within ABZR87_RS17425 at 268.279 kb on - strand, within ABZR87_RS17425 at 268.464 kb on + strand, within ABZR87_RS17425 at 268.510 kb on - strand, within ABZR87_RS17425 at 268.582 kb on - strand, within ABZR87_RS17425 at 268.641 kb on + strand, within ABZR87_RS17425 at 268.641 kb on + strand, within ABZR87_RS17425 at 268.641 kb on + strand, within ABZR87_RS17425 at 268.641 kb on + strand, within ABZR87_RS17425 at 268.642 kb on - strand, within ABZR87_RS17425 at 268.642 kb on - strand, within ABZR87_RS17425 at 268.642 kb on - strand, within ABZR87_RS17425 at 268.642 kb on - strand, within ABZR87_RS17425 at 268.800 kb on + strand, within ABZR87_RS17425 at 268.801 kb on - strand, within ABZR87_RS17425 at 268.854 kb on + strand, within ABZR87_RS17425 at 268.855 kb on - strand, within ABZR87_RS17425 at 268.855 kb on - strand, within ABZR87_RS17425 at 268.855 kb on - strand, within ABZR87_RS17425 at 268.863 kb on + strand, within ABZR87_RS17425 at 268.864 kb on - strand, within ABZR87_RS17425 at 268.906 kb on - strand, within ABZR87_RS17425 at 268.974 kb on + strand, within ABZR87_RS17425 at 268.975 kb on - strand, within ABZR87_RS17425 at 268.975 kb on - strand, within ABZR87_RS17425 at 269.072 kb on - strand at 269.078 kb on - strand at 269.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 265,852 + ABZR87_RS17410 0.81 +0.1 265,852 + ABZR87_RS17410 0.81 +0.3 265,853 - ABZR87_RS17410 0.81 -1.4 266,099 - +0.2 266,105 + +0.3 266,115 - -0.9 266,115 - +1.1 266,115 - +0.3 266,223 + ABZR87_RS17415 0.24 -0.2 266,223 + ABZR87_RS17415 0.24 -0.7 266,234 + ABZR87_RS17415 0.26 -0.3 266,235 - ABZR87_RS17415 0.26 -1.2 266,497 + ABZR87_RS17415 0.67 -0.1 266,497 + ABZR87_RS17415 0.67 -0.4 266,497 + ABZR87_RS17415 0.67 -0.0 266,498 - ABZR87_RS17415 0.67 -0.0 266,498 - ABZR87_RS17415 0.67 -0.8 266,987 + ABZR87_RS17420 0.20 -0.5 267,059 + ABZR87_RS17420 0.26 -2.0 267,059 + ABZR87_RS17420 0.26 -0.4 267,059 + ABZR87_RS17420 0.26 +0.3 267,060 - ABZR87_RS17420 0.26 -1.6 267,089 + ABZR87_RS17420 0.28 -0.6 267,089 + ABZR87_RS17420 0.28 -0.8 267,394 - ABZR87_RS17420 0.50 -1.2 267,394 - ABZR87_RS17420 0.50 +0.2 267,617 + ABZR87_RS17420 0.66 -0.2 267,617 + ABZR87_RS17420 0.66 -0.0 267,618 - ABZR87_RS17420 0.66 -0.8 267,618 - ABZR87_RS17420 0.66 -0.3 267,618 - ABZR87_RS17420 0.66 -2.0 267,677 + ABZR87_RS17420 0.70 +1.5 267,678 - ABZR87_RS17420 0.70 -0.5 268,109 + +0.5 268,110 - -1.3 268,185 + +0.5 268,186 - +0.0 268,278 + ABZR87_RS17425 0.13 -0.1 268,278 + ABZR87_RS17425 0.13 +0.4 268,279 - ABZR87_RS17425 0.13 +0.4 268,464 + ABZR87_RS17425 0.33 -0.0 268,510 - ABZR87_RS17425 0.38 +1.0 268,582 - ABZR87_RS17425 0.46 +0.5 268,641 + ABZR87_RS17425 0.52 +0.4 268,641 + ABZR87_RS17425 0.52 -0.0 268,641 + ABZR87_RS17425 0.52 -0.8 268,641 + ABZR87_RS17425 0.52 -0.4 268,642 - ABZR87_RS17425 0.52 -0.2 268,642 - ABZR87_RS17425 0.52 -0.8 268,642 - ABZR87_RS17425 0.52 +1.1 268,642 - ABZR87_RS17425 0.52 -0.6 268,800 + ABZR87_RS17425 0.69 +0.2 268,801 - ABZR87_RS17425 0.69 +0.6 268,854 + ABZR87_RS17425 0.75 -0.1 268,855 - ABZR87_RS17425 0.75 +0.4 268,855 - ABZR87_RS17425 0.75 -0.1 268,855 - ABZR87_RS17425 0.75 +0.2 268,863 + ABZR87_RS17425 0.76 -0.1 268,864 - ABZR87_RS17425 0.76 +0.1 268,906 - ABZR87_RS17425 0.81 -1.3 268,974 + ABZR87_RS17425 0.88 -0.2 268,975 - ABZR87_RS17425 0.88 +0.8 268,975 - ABZR87_RS17425 0.88 +0.0 269,072 - -1.1 269,078 - -0.3 269,078 - +0.3
Or see this region's nucleotide sequence