Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17365 and ABZR87_RS17370 are separated by 70 nucleotides ABZR87_RS17370 and ABZR87_RS17375 are separated by 22 nucleotides ABZR87_RS17375 and ABZR87_RS17380 are separated by 289 nucleotides
ABZR87_RS17365: ABZR87_RS17365 - serine hydrolase, at 250,784 to 251,926
_RS17365
ABZR87_RS17370: ABZR87_RS17370 - DUF1854 domain-containing protein, at 251,997 to 252,467
_RS17370
ABZR87_RS17375: ABZR87_RS17375 - ABC transporter ATP-binding protein, at 252,490 to 254,796
_RS17375
ABZR87_RS17380: ABZR87_RS17380 - cyanophycin synthetase, at 255,086 to 257,746
_RS17380
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -2
-1
0
1
2 at 251.708 kb on + strand, within ABZR87_RS17365 at 251.708 kb on + strand, within ABZR87_RS17365 at 251.709 kb on - strand, within ABZR87_RS17365 at 251.756 kb on + strand, within ABZR87_RS17365 at 251.757 kb on - strand, within ABZR87_RS17365 at 251.757 kb on - strand, within ABZR87_RS17365 at 251.757 kb on - strand, within ABZR87_RS17365 at 251.814 kb on + strand at 251.815 kb on - strand at 251.815 kb on - strand at 251.847 kb on - strand at 251.998 kb on + strand at 252.061 kb on + strand, within ABZR87_RS17370 at 252.062 kb on - strand, within ABZR87_RS17370 at 252.062 kb on - strand, within ABZR87_RS17370 at 252.190 kb on + strand, within ABZR87_RS17370 at 252.191 kb on - strand, within ABZR87_RS17370 at 252.191 kb on - strand, within ABZR87_RS17370 at 252.191 kb on - strand, within ABZR87_RS17370 at 252.191 kb on - strand, within ABZR87_RS17370 at 252.198 kb on + strand, within ABZR87_RS17370 at 252.500 kb on + strand at 252.501 kb on - strand at 252.501 kb on - strand at 252.590 kb on + strand at 252.590 kb on + strand at 252.590 kb on + strand at 252.590 kb on + strand at 252.591 kb on - strand at 252.591 kb on - strand at 252.591 kb on - strand at 252.593 kb on + strand at 252.593 kb on + strand at 252.593 kb on + strand at 252.593 kb on + strand at 252.593 kb on + strand at 252.593 kb on + strand at 252.593 kb on + strand at 252.593 kb on + strand at 252.594 kb on - strand at 252.899 kb on + strand, within ABZR87_RS17375 at 252.899 kb on + strand, within ABZR87_RS17375 at 252.990 kb on - strand, within ABZR87_RS17375 at 253.022 kb on - strand, within ABZR87_RS17375 at 253.022 kb on - strand, within ABZR87_RS17375 at 253.022 kb on - strand, within ABZR87_RS17375 at 253.127 kb on + strand, within ABZR87_RS17375 at 253.127 kb on + strand, within ABZR87_RS17375 at 253.127 kb on + strand, within ABZR87_RS17375 at 253.127 kb on + strand, within ABZR87_RS17375 at 253.128 kb on - strand, within ABZR87_RS17375 at 253.128 kb on - strand, within ABZR87_RS17375 at 253.128 kb on - strand, within ABZR87_RS17375 at 253.128 kb on - strand, within ABZR87_RS17375 at 253.330 kb on + strand, within ABZR87_RS17375 at 253.330 kb on + strand, within ABZR87_RS17375 at 253.331 kb on - strand, within ABZR87_RS17375 at 253.331 kb on - strand, within ABZR87_RS17375 at 253.331 kb on - strand, within ABZR87_RS17375 at 253.421 kb on + strand, within ABZR87_RS17375 at 253.434 kb on + strand, within ABZR87_RS17375 at 253.434 kb on + strand, within ABZR87_RS17375 at 253.435 kb on - strand, within ABZR87_RS17375 at 253.436 kb on + strand, within ABZR87_RS17375 at 253.436 kb on + strand, within ABZR87_RS17375 at 253.437 kb on - strand, within ABZR87_RS17375 at 253.961 kb on + strand, within ABZR87_RS17375 at 253.962 kb on - strand, within ABZR87_RS17375 at 253.991 kb on + strand, within ABZR87_RS17375 at 253.991 kb on + strand, within ABZR87_RS17375 at 253.991 kb on + strand, within ABZR87_RS17375 at 253.991 kb on + strand, within ABZR87_RS17375 at 253.992 kb on - strand, within ABZR87_RS17375 at 254.045 kb on + strand, within ABZR87_RS17375 at 254.045 kb on + strand, within ABZR87_RS17375 at 254.045 kb on + strand, within ABZR87_RS17375 at 254.045 kb on + strand, within ABZR87_RS17375 at 254.046 kb on - strand, within ABZR87_RS17375 at 254.046 kb on - strand, within ABZR87_RS17375 at 254.062 kb on + strand, within ABZR87_RS17375 at 254.062 kb on + strand, within ABZR87_RS17375 at 254.062 kb on + strand, within ABZR87_RS17375 at 254.063 kb on - strand, within ABZR87_RS17375 at 254.105 kb on + strand, within ABZR87_RS17375 at 254.105 kb on + strand, within ABZR87_RS17375 at 254.123 kb on + strand, within ABZR87_RS17375 at 254.124 kb on - strand, within ABZR87_RS17375 at 254.187 kb on - strand, within ABZR87_RS17375 at 254.534 kb on - strand, within ABZR87_RS17375 at 254.534 kb on - strand, within ABZR87_RS17375 at 254.634 kb on + strand at 254.635 kb on - strand at 254.656 kb on - strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.869 kb on + strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.870 kb on - strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.928 kb on + strand at 254.929 kb on - strand at 254.929 kb on - strand at 254.929 kb on - strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.930 kb on + strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.931 kb on - strand at 254.934 kb on + strand at 254.934 kb on + strand at 254.934 kb on + strand at 254.935 kb on - strand at 254.935 kb on - strand at 254.935 kb on - strand at 254.935 kb on - strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.008 kb on + strand at 255.009 kb on - strand at 255.009 kb on - strand at 255.014 kb on + strand at 255.014 kb on + strand at 255.056 kb on + strand at 255.057 kb on - strand at 255.057 kb on - strand at 255.084 kb on - strand at 255.139 kb on + strand at 255.139 kb on + strand at 255.140 kb on - strand at 255.140 kb on - strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.149 kb on + strand at 255.150 kb on - strand at 255.150 kb on - strand at 255.150 kb on - strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.224 kb on + strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.225 kb on - strand at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.422 kb on + strand, within ABZR87_RS17380 at 255.423 kb on - strand, within ABZR87_RS17380 at 255.423 kb on - strand, within ABZR87_RS17380 at 255.518 kb on + strand, within ABZR87_RS17380 at 255.519 kb on - strand, within ABZR87_RS17380
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 251,708 + ABZR87_RS17365 0.81 +0.7 251,708 + ABZR87_RS17365 0.81 -0.2 251,709 - ABZR87_RS17365 0.81 -0.3 251,756 + ABZR87_RS17365 0.85 +0.2 251,757 - ABZR87_RS17365 0.85 -0.5 251,757 - ABZR87_RS17365 0.85 -1.4 251,757 - ABZR87_RS17365 0.85 +0.9 251,814 + +0.4 251,815 - +2.0 251,815 - +0.2 251,847 - -0.1 251,998 + +2.0 252,061 + ABZR87_RS17370 0.14 -0.9 252,062 - ABZR87_RS17370 0.14 +1.0 252,062 - ABZR87_RS17370 0.14 +0.2 252,190 + ABZR87_RS17370 0.41 +0.5 252,191 - ABZR87_RS17370 0.41 -0.5 252,191 - ABZR87_RS17370 0.41 +0.8 252,191 - ABZR87_RS17370 0.41 -0.4 252,191 - ABZR87_RS17370 0.41 -1.5 252,198 + ABZR87_RS17370 0.43 +1.1 252,500 + +0.6 252,501 - -2.2 252,501 - +0.9 252,590 + -0.4 252,590 + -0.6 252,590 + +0.4 252,590 + -0.3 252,591 - +0.1 252,591 - -0.3 252,591 - +0.7 252,593 + +0.3 252,593 + -0.7 252,593 + -0.6 252,593 + -0.0 252,593 + +2.4 252,593 + -2.4 252,593 + +0.4 252,593 + -0.7 252,594 - +0.2 252,899 + ABZR87_RS17375 0.18 -0.5 252,899 + ABZR87_RS17375 0.18 -0.4 252,990 - ABZR87_RS17375 0.22 -1.4 253,022 - ABZR87_RS17375 0.23 +0.3 253,022 - ABZR87_RS17375 0.23 -1.4 253,022 - ABZR87_RS17375 0.23 +0.2 253,127 + ABZR87_RS17375 0.28 -0.1 253,127 + ABZR87_RS17375 0.28 -0.5 253,127 + ABZR87_RS17375 0.28 +0.2 253,127 + ABZR87_RS17375 0.28 -1.2 253,128 - ABZR87_RS17375 0.28 -0.1 253,128 - ABZR87_RS17375 0.28 -0.7 253,128 - ABZR87_RS17375 0.28 -0.7 253,128 - ABZR87_RS17375 0.28 -0.3 253,330 + ABZR87_RS17375 0.36 -0.8 253,330 + ABZR87_RS17375 0.36 +0.4 253,331 - ABZR87_RS17375 0.36 -0.5 253,331 - ABZR87_RS17375 0.36 -1.6 253,331 - ABZR87_RS17375 0.36 +0.3 253,421 + ABZR87_RS17375 0.40 -1.3 253,434 + ABZR87_RS17375 0.41 -1.3 253,434 + ABZR87_RS17375 0.41 -0.5 253,435 - ABZR87_RS17375 0.41 -0.1 253,436 + ABZR87_RS17375 0.41 +0.6 253,436 + ABZR87_RS17375 0.41 -1.6 253,437 - ABZR87_RS17375 0.41 +0.3 253,961 + ABZR87_RS17375 0.64 -0.7 253,962 - ABZR87_RS17375 0.64 +0.0 253,991 + ABZR87_RS17375 0.65 -0.9 253,991 + ABZR87_RS17375 0.65 -0.8 253,991 + ABZR87_RS17375 0.65 +0.4 253,991 + ABZR87_RS17375 0.65 -0.4 253,992 - ABZR87_RS17375 0.65 -0.9 254,045 + ABZR87_RS17375 0.67 -2.0 254,045 + ABZR87_RS17375 0.67 +0.0 254,045 + ABZR87_RS17375 0.67 +0.7 254,045 + ABZR87_RS17375 0.67 -0.1 254,046 - ABZR87_RS17375 0.67 -0.8 254,046 - ABZR87_RS17375 0.67 -1.4 254,062 + ABZR87_RS17375 0.68 -0.5 254,062 + ABZR87_RS17375 0.68 -1.0 254,062 + ABZR87_RS17375 0.68 -0.4 254,063 - ABZR87_RS17375 0.68 +0.3 254,105 + ABZR87_RS17375 0.70 -2.4 254,105 + ABZR87_RS17375 0.70 -0.8 254,123 + ABZR87_RS17375 0.71 +0.4 254,124 - ABZR87_RS17375 0.71 -0.9 254,187 - ABZR87_RS17375 0.74 -0.4 254,534 - ABZR87_RS17375 0.89 -0.8 254,534 - ABZR87_RS17375 0.89 -1.2 254,634 + -0.2 254,635 - -0.0 254,656 - +0.5 254,869 + +0.4 254,869 + -0.4 254,869 + +0.1 254,869 + +0.8 254,870 - +0.0 254,870 - -1.6 254,870 - -0.8 254,870 - -0.8 254,870 - -1.2 254,928 + +0.4 254,928 + +1.1 254,928 + -1.4 254,928 + +0.6 254,928 + +0.6 254,929 - +0.5 254,929 - -0.4 254,929 - -0.7 254,930 + +0.4 254,930 + +0.1 254,930 + -0.1 254,930 + -0.0 254,930 + +0.1 254,930 + -2.1 254,931 - +2.0 254,931 - -1.0 254,931 - -0.3 254,931 - +0.3 254,931 - -0.1 254,931 - +0.7 254,931 - -0.1 254,931 - -0.6 254,931 - -0.9 254,934 + +0.2 254,934 + +0.0 254,934 + +0.5 254,935 - -0.4 254,935 - +0.1 254,935 - +0.1 254,935 - -0.9 255,008 + +0.5 255,008 + -0.5 255,008 + -0.7 255,008 + +0.3 255,009 - -0.2 255,009 - -0.9 255,014 + +0.1 255,014 + -0.0 255,056 + -0.0 255,057 - +0.4 255,057 - +0.0 255,084 - -0.0 255,139 + -1.0 255,139 + -0.7 255,140 - -0.6 255,140 - -1.9 255,149 + +0.2 255,149 + -0.3 255,149 + +0.2 255,149 + +0.5 255,150 - +0.6 255,150 - +0.5 255,150 - -0.2 255,224 + -0.6 255,224 + -1.9 255,224 + -0.4 255,224 + -0.8 255,225 - -0.1 255,225 - +1.6 255,225 - -0.6 255,225 - +0.2 255,225 - +1.0 255,225 - -1.3 255,225 - -1.1 255,422 + ABZR87_RS17380 0.13 -0.0 255,422 + ABZR87_RS17380 0.13 +0.5 255,422 + ABZR87_RS17380 0.13 -1.7 255,422 + ABZR87_RS17380 0.13 -1.0 255,423 - ABZR87_RS17380 0.13 -0.4 255,423 - ABZR87_RS17380 0.13 -0.4 255,518 + ABZR87_RS17380 0.16 +0.7 255,519 - ABZR87_RS17380 0.16 -0.3
Or see this region's nucleotide sequence