Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17255 and ABZR87_RS17260 are separated by 451 nucleotides ABZR87_RS17260 and ABZR87_RS17265 are separated by 96 nucleotides ABZR87_RS17265 and ABZR87_RS17270 are separated by 9 nucleotides ABZR87_RS17270 and ABZR87_RS17275 are separated by 106 nucleotides
ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007
_RS17255
ABZR87_RS17260: ABZR87_RS17260 - ferric iron uptake transcriptional regulator, at 230,459 to 230,914
_RS17260
ABZR87_RS17265: ABZR87_RS17265 - hypothetical protein, at 231,011 to 231,262
_RS17265
ABZR87_RS17270: ABZR87_RS17270 - hypothetical protein, at 231,272 to 231,577
_RS17270
ABZR87_RS17275: ABZR87_RS17275 - DUF6587 family protein, at 231,684 to 232,004
_RS17275
Position (kb) 230
231 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.462 kb on + strand, within ABZR87_RS17255 at 229.462 kb on + strand, within ABZR87_RS17255 at 229.463 kb on - strand, within ABZR87_RS17255 at 229.463 kb on - strand, within ABZR87_RS17255 at 229.463 kb on - strand, within ABZR87_RS17255 at 229.486 kb on + strand, within ABZR87_RS17255 at 229.486 kb on + strand, within ABZR87_RS17255 at 229.487 kb on - strand, within ABZR87_RS17255 at 229.519 kb on + strand, within ABZR87_RS17255 at 229.519 kb on + strand, within ABZR87_RS17255 at 229.520 kb on - strand, within ABZR87_RS17255 at 229.520 kb on - strand, within ABZR87_RS17255 at 229.813 kb on + strand, within ABZR87_RS17255 at 229.813 kb on + strand, within ABZR87_RS17255 at 229.813 kb on + strand, within ABZR87_RS17255 at 229.813 kb on + strand, within ABZR87_RS17255 at 229.814 kb on - strand, within ABZR87_RS17255 at 229.867 kb on + strand, within ABZR87_RS17255 at 229.868 kb on - strand, within ABZR87_RS17255 at 229.952 kb on + strand at 229.953 kb on - strand at 229.981 kb on + strand at 230.006 kb on - strand at 230.006 kb on - strand at 230.264 kb on + strand at 230.264 kb on + strand at 230.264 kb on + strand at 230.264 kb on + strand at 230.264 kb on + strand at 230.265 kb on - strand at 230.265 kb on - strand at 230.415 kb on + strand at 230.415 kb on + strand at 230.415 kb on + strand at 230.432 kb on + strand at 230.432 kb on + strand at 230.433 kb on - strand at 230.433 kb on - strand at 230.494 kb on + strand at 230.494 kb on + strand at 230.579 kb on + strand, within ABZR87_RS17260 at 230.579 kb on + strand, within ABZR87_RS17260 at 230.580 kb on - strand, within ABZR87_RS17260 at 230.580 kb on - strand, within ABZR87_RS17260 at 230.580 kb on - strand, within ABZR87_RS17260 at 230.627 kb on + strand, within ABZR87_RS17260 at 230.674 kb on + strand, within ABZR87_RS17260 at 230.674 kb on + strand, within ABZR87_RS17260 at 230.674 kb on + strand, within ABZR87_RS17260 at 230.674 kb on + strand, within ABZR87_RS17260 at 230.674 kb on + strand, within ABZR87_RS17260 at 230.674 kb on + strand, within ABZR87_RS17260 at 230.675 kb on - strand, within ABZR87_RS17260 at 230.675 kb on - strand, within ABZR87_RS17260 at 230.675 kb on - strand, within ABZR87_RS17260 at 230.699 kb on + strand, within ABZR87_RS17260 at 230.699 kb on + strand, within ABZR87_RS17260 at 230.699 kb on + strand, within ABZR87_RS17260 at 230.699 kb on + strand, within ABZR87_RS17260 at 230.699 kb on + strand, within ABZR87_RS17260 at 230.699 kb on + strand, within ABZR87_RS17260 at 230.699 kb on + strand, within ABZR87_RS17260 at 230.700 kb on - strand, within ABZR87_RS17260 at 230.700 kb on - strand, within ABZR87_RS17260 at 230.849 kb on + strand, within ABZR87_RS17260 at 230.850 kb on - strand, within ABZR87_RS17260 at 230.925 kb on + strand at 230.926 kb on - strand at 230.926 kb on - strand at 230.941 kb on + strand at 230.942 kb on - strand at 230.995 kb on + strand at 231.239 kb on + strand at 231.239 kb on + strand at 231.239 kb on + strand at 231.239 kb on + strand at 231.239 kb on + strand at 231.240 kb on - strand at 231.240 kb on - strand at 231.273 kb on + strand at 231.273 kb on + strand at 231.274 kb on - strand at 231.426 kb on - strand, within ABZR87_RS17270 at 231.609 kb on + strand at 231.610 kb on - strand at 231.610 kb on - strand at 231.685 kb on + strand at 231.686 kb on - strand at 231.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 229,462 + ABZR87_RS17255 0.56 +0.2 229,462 + ABZR87_RS17255 0.56 +0.3 229,463 - ABZR87_RS17255 0.57 -0.2 229,463 - ABZR87_RS17255 0.57 +0.5 229,463 - ABZR87_RS17255 0.57 +0.1 229,486 + ABZR87_RS17255 0.58 +0.7 229,486 + ABZR87_RS17255 0.58 -0.0 229,487 - ABZR87_RS17255 0.58 +0.1 229,519 + ABZR87_RS17255 0.61 -1.0 229,519 + ABZR87_RS17255 0.61 -0.6 229,520 - ABZR87_RS17255 0.61 -0.2 229,520 - ABZR87_RS17255 0.61 -0.9 229,813 + ABZR87_RS17255 0.84 -0.0 229,813 + ABZR87_RS17255 0.84 -1.3 229,813 + ABZR87_RS17255 0.84 +0.2 229,813 + ABZR87_RS17255 0.84 +0.6 229,814 - ABZR87_RS17255 0.85 +0.2 229,867 + ABZR87_RS17255 0.89 +1.2 229,868 - ABZR87_RS17255 0.89 -0.3 229,952 + -1.6 229,953 - +0.1 229,981 + +0.0 230,006 - -0.8 230,006 - -1.0 230,264 + +1.0 230,264 + +0.1 230,264 + +1.1 230,264 + +0.3 230,264 + +0.1 230,265 - -0.8 230,265 - -0.4 230,415 + -0.1 230,415 + -0.0 230,415 + +1.4 230,432 + +0.3 230,432 + +0.7 230,433 - +0.4 230,433 - -0.4 230,494 + +0.2 230,494 + +0.8 230,579 + ABZR87_RS17260 0.26 +0.6 230,579 + ABZR87_RS17260 0.26 -0.7 230,580 - ABZR87_RS17260 0.27 -0.0 230,580 - ABZR87_RS17260 0.27 -1.7 230,580 - ABZR87_RS17260 0.27 +0.1 230,627 + ABZR87_RS17260 0.37 +0.8 230,674 + ABZR87_RS17260 0.47 +0.5 230,674 + ABZR87_RS17260 0.47 +0.2 230,674 + ABZR87_RS17260 0.47 +0.4 230,674 + ABZR87_RS17260 0.47 -0.5 230,674 + ABZR87_RS17260 0.47 -0.2 230,674 + ABZR87_RS17260 0.47 -0.0 230,675 - ABZR87_RS17260 0.47 -0.2 230,675 - ABZR87_RS17260 0.47 +0.1 230,675 - ABZR87_RS17260 0.47 +1.1 230,699 + ABZR87_RS17260 0.53 -0.8 230,699 + ABZR87_RS17260 0.53 -0.0 230,699 + ABZR87_RS17260 0.53 +0.1 230,699 + ABZR87_RS17260 0.53 +0.4 230,699 + ABZR87_RS17260 0.53 -0.1 230,699 + ABZR87_RS17260 0.53 +0.0 230,699 + ABZR87_RS17260 0.53 +0.2 230,700 - ABZR87_RS17260 0.53 +0.0 230,700 - ABZR87_RS17260 0.53 +0.7 230,849 + ABZR87_RS17260 0.86 -0.2 230,850 - ABZR87_RS17260 0.86 -0.6 230,925 + -0.3 230,926 - -0.7 230,926 - -0.1 230,941 + -0.6 230,942 - -0.8 230,995 + +1.9 231,239 + -1.9 231,239 + -0.0 231,239 + -0.8 231,239 + -0.0 231,239 + +0.7 231,240 - +2.2 231,240 - +1.0 231,273 + +0.2 231,273 + +0.3 231,274 - -0.3 231,426 - ABZR87_RS17270 0.50 +0.1 231,609 + +1.0 231,610 - -0.2 231,610 - -0.2 231,685 + +0.0 231,686 - -0.0 231,686 - +0.4
Or see this region's nucleotide sequence