Experiment: Dictyostellum sp.mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10060 and ABZR87_RS10065 are separated by 75 nucleotides ABZR87_RS10065 and ABZR87_RS10070 are separated by 151 nucleotides
ABZR87_RS10060: ABZR87_RS10060 - DNA recombination protein RmuC, at 2,136,438 to 2,137,922
_RS10060
ABZR87_RS10065: ABZR87_RS10065 - hypothetical protein, at 2,137,998 to 2,138,276
_RS10065
ABZR87_RS10070: ABZR87_RS10070 - gephyrin-like molybdotransferase Glp, at 2,138,428 to 2,139,714
_RS10070
Position (kb)
2137
2138
2139 Strain fitness (log2 ratio)
-2
-1
0
1 at 2137.233 kb on + strand, within ABZR87_RS10060 at 2137.368 kb on + strand, within ABZR87_RS10060 at 2137.368 kb on + strand, within ABZR87_RS10060 at 2137.479 kb on + strand, within ABZR87_RS10060 at 2137.480 kb on - strand, within ABZR87_RS10060 at 2137.539 kb on + strand, within ABZR87_RS10060 at 2137.539 kb on + strand, within ABZR87_RS10060 at 2137.540 kb on - strand, within ABZR87_RS10060 at 2137.540 kb on - strand, within ABZR87_RS10060 at 2137.540 kb on - strand, within ABZR87_RS10060 at 2137.920 kb on + strand at 2138.065 kb on + strand, within ABZR87_RS10065 at 2138.065 kb on + strand, within ABZR87_RS10065 at 2138.065 kb on + strand, within ABZR87_RS10065 at 2138.065 kb on + strand, within ABZR87_RS10065 at 2138.065 kb on + strand, within ABZR87_RS10065 at 2138.066 kb on - strand, within ABZR87_RS10065 at 2138.066 kb on - strand, within ABZR87_RS10065 at 2138.212 kb on + strand, within ABZR87_RS10065 at 2138.212 kb on + strand, within ABZR87_RS10065 at 2138.212 kb on + strand, within ABZR87_RS10065 at 2138.212 kb on + strand, within ABZR87_RS10065 at 2138.212 kb on + strand, within ABZR87_RS10065 at 2138.212 kb on + strand, within ABZR87_RS10065 at 2138.213 kb on - strand, within ABZR87_RS10065 at 2138.213 kb on - strand, within ABZR87_RS10065 at 2138.213 kb on - strand, within ABZR87_RS10065 at 2138.221 kb on - strand, within ABZR87_RS10065 at 2138.254 kb on + strand at 2138.254 kb on + strand at 2138.254 kb on + strand at 2138.255 kb on - strand at 2138.324 kb on + strand at 2138.429 kb on + strand at 2138.446 kb on + strand at 2138.446 kb on + strand at 2138.447 kb on - strand at 2138.447 kb on - strand at 2138.447 kb on - strand at 2138.447 kb on - strand at 2138.447 kb on - strand at 2138.612 kb on + strand, within ABZR87_RS10070 at 2138.732 kb on + strand, within ABZR87_RS10070 at 2139.065 kb on + strand, within ABZR87_RS10070
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-1 remove 2,137,233 + ABZR87_RS10060 0.54 -0.8 2,137,368 + ABZR87_RS10060 0.63 -0.4 2,137,368 + ABZR87_RS10060 0.63 +0.7 2,137,479 + ABZR87_RS10060 0.70 +0.2 2,137,480 - ABZR87_RS10060 0.70 -0.8 2,137,539 + ABZR87_RS10060 0.74 -0.8 2,137,539 + ABZR87_RS10060 0.74 -1.4 2,137,540 - ABZR87_RS10060 0.74 -0.6 2,137,540 - ABZR87_RS10060 0.74 -0.7 2,137,540 - ABZR87_RS10060 0.74 -0.3 2,137,920 + -0.2 2,138,065 + ABZR87_RS10065 0.24 -0.0 2,138,065 + ABZR87_RS10065 0.24 -2.7 2,138,065 + ABZR87_RS10065 0.24 -0.2 2,138,065 + ABZR87_RS10065 0.24 +0.5 2,138,065 + ABZR87_RS10065 0.24 -0.6 2,138,066 - ABZR87_RS10065 0.24 +0.4 2,138,066 - ABZR87_RS10065 0.24 +0.2 2,138,212 + ABZR87_RS10065 0.77 -0.6 2,138,212 + ABZR87_RS10065 0.77 +1.0 2,138,212 + ABZR87_RS10065 0.77 +0.1 2,138,212 + ABZR87_RS10065 0.77 -1.5 2,138,212 + ABZR87_RS10065 0.77 -0.7 2,138,212 + ABZR87_RS10065 0.77 +0.6 2,138,213 - ABZR87_RS10065 0.77 +0.0 2,138,213 - ABZR87_RS10065 0.77 +0.2 2,138,213 - ABZR87_RS10065 0.77 +0.2 2,138,221 - ABZR87_RS10065 0.80 -0.1 2,138,254 + -0.2 2,138,254 + +0.7 2,138,254 + +0.3 2,138,255 - +1.3 2,138,324 + +0.0 2,138,429 + +0.5 2,138,446 + -0.1 2,138,446 + -0.3 2,138,447 - -0.3 2,138,447 - +0.1 2,138,447 - +1.0 2,138,447 - +0.3 2,138,447 - +0.7 2,138,612 + ABZR87_RS10070 0.14 +0.6 2,138,732 + ABZR87_RS10070 0.24 +1.0 2,139,065 + ABZR87_RS10070 0.49 +0.7
Or see this region's nucleotide sequence